PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047230001
Common NameGSBRNA2T00047230001, LOC106360280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family YABBY
Protein Properties Length: 159aa    MW: 17927.2 Da    PI: 10.5495
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047230001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.59.6e-60113431170
                YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPe 120
                          +f++vtvrCGhCt+lls+n+ ++ ++ + +       +++l++++++ +++++ ++  ++s s+++ s++lsen d+e+pr+pp irPPe
  GSBRNA2T00047230001   1 MFTLVTVRCGHCTNLLSLNIGVSLHQSPPTPI-----HQDLQQHKQQITTSITRKEYGSSSRSSNHFSTTLSENVDREAPRMPP-IRPPE 84 
                          699********************999998873.....4455555555556666666666666666666678***********99.9**** PP

                YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          krqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  GSBRNA2T00047230001  85 KRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 134
                          ************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.2E-561134IPR006780YABBY protein
SuperFamilySSF470957.99E-879127IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.8E-582128IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MFTLVTVRCG HCTNLLSLNI GVSLHQSPPT PIHQDLQQHK QQITTSITRK EYGSSSRSSN  60
HFSTTLSENV DREAPRMPPI RPPEKRQRVP SAYNRFIKEE IQRIKAGNPE ISHREAFSTA  120
AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA GQKSNGYY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047230001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110891.11e-116PREDICTED: putative axial regulator YABBY 2 isoform X1
RefseqXP_013655318.11e-116putative axial regulator YABBY 2 isoform X1
RefseqXP_013657611.11e-116putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB02e-97YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A078H0Y71e-115A0A078H0Y7_BRANA; BnaA08g26920D protein
TrEMBLA0A397YFU61e-115A0A397YFU6_BRACM; Uncharacterized protein
STRINGBra030728.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-93YABBY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]