PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045302001 | ||||||||
Common Name | GSBRNA2T00045302001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 449aa MW: 50420.9 Da PI: 7.6315 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.2 | 7.9e-10 | 264 | 301 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F+ ++yp ++e LAk++gLt++qV++WF N R + GSBRNA2T00045302001 264 FNHflHPYPRDLDKEMLAKQTGLTKSQVSNWFINARVR 301 5544589*****************************87 PP | |||||||
2 | BELL | 105.6 | 3.2e-34 | 143 | 213 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rqelq k+akL+s++e+V++ Ykqy++q+qtvissFe+ aglgsa++Yt++Al++iS++Fr++k++i+ qi GSBRNA2T00045302001 143 RQELQLKRAKLISMVEKVEQIYKQYHDQMQTVISSFEQEAGLGSANSYTHMALQTISKKFRAVKNMICLQI 213 79******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.6E-44 | 79 | 211 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-32 | 90 | 209 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.066 | 242 | 305 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 245 | 309 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.42E-12 | 245 | 306 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-17 | 246 | 312 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 248 | 311 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.0E-18 | 262 | 301 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MAVFFQGETE MREPSSDLFM VNLNPSPDQT MTINAHNNHF YNLCFAPQQH PQRMNKYEVL 60 DHIEQANCSA ISTVSNGRVT QSFRALAPTY LRVAQELLNE IVHVGHGSRG AKQEQQMNNE 120 SATYGLYNGV GNINGGPKPG VCRQELQLKR AKLISMVEKV EQIYKQYHDQ MQTVISSFEQ 180 EAGLGSANSY THMALQTISK KFRAVKNMIC LQIKRINNLL GEKECEGVSL AKQLGKMPDN 240 HSNAWRPQRG LPETAVSVLR AWLFNHFLHP YPRDLDKEML AKQTGLTKSQ VSNWFINARV 300 RVWKPMVEEM YLEEMNIEES RKGGNLSEHG NKGSSSKQLC NNTTSDESSN LILPAFHQGF 360 IENETSMQNS FSSCSVMTFG KQHVNQAKLI QFNGGFENYH AMVGNGVSLS LGMPHSCDQS 420 FNNIQFGSTS NETKISGIYP SLTYQNMD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 251 | 309 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 251 | 309 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045302001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747083.1 | 0.0 | BEL1-like homeodomain protein 5 | ||||
Swissprot | Q8S897 | 0.0 | BLH5_ARATH; BEL1-like homeodomain protein 5 | ||||
TrEMBL | A0A078GYM0 | 0.0 | A0A078GYM0_BRANA; BnaA04g15670D protein | ||||
TrEMBL | A0A3P6CTZ7 | 0.0 | A0A3P6CTZ7_BRACM; Uncharacterized protein | ||||
STRING | Bra034335.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14749 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27220.1 | 0.0 | BEL1-like homeodomain 5 |
Publications ? help Back to Top | |||
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