PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042030001
Common NameGSBRNA2T00042030001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 692aa    MW: 72709.3 Da    PI: 10.2604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09197226130
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                          r++W+ eEd+ l+ avk++G g+W++I+++
  GSBRNA2T00042030001 197 RKKWSVEEDLELIAAVKRHGEGSWALISKE 226
                          789************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.966192249IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-11192244IPR009057Homeodomain-like
SuperFamilySSF466892.47E-9193247IPR009057Homeodomain-like
SMARTSM007173.7E-5196247IPR001005SANT/Myb domain
PfamPF002499.7E-8197226IPR001005SANT/Myb domain
CDDcd116603.62E-8198241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MVDSSSSNKK RKEFISEGDI ATLLQRYDTM TILKLLQEMA YYAEPKMDWN ELVKKTSTGI  60
TSAREYQLLW RHLAYRDSLL PMDDNPLLQD DDSDIEFELE ASPAVTVDAV SEAVAHVKVI  120
AASYVPSESD IPEDSICEAP LTINIPYGLQ RRPQEPSGSY WSSRGMNITF PISLQKAAEG  180
HNGNGLASNM GGPRKKRKKW SVEEDLELIA AVKRHGEGSW ALISKEEYEG EITVAQLSQR  240
WGSIRRRGDI SNSSTQSYQQ RTEAANRALS LAVGNRIPSK KVAVGIPPVL TSGSTTGAQG  300
NGSSLQGQQQ AKPVVQAIPR AATAVQTAKS RVTARKPTST LRAELMVTAN SVATAACMSG  360
LGTAASVPKV EPGKNAAPAL VSKVKSSQAS LPRPSGISTT LNAEPVKSAS TASFPRPLGT  420
ISSAKAEPVK TTSAAALPRL SAPKADLVKT GHAVSLPRPS GITSSTKAEL MKTASAASSP  480
RPESMPSAPK GEPLKSVSAA AAATTKTQVV GPLSARNAAN GPFNKPSPMA PFSKGPTIQN  540
ISVPSRFASS RLAPTQRVNA TTAMPQNPSV GVAVTSSSKP VGVQKEQTQG SRTSPLVTTT  600
LQPDKTISTN SVISAGKPVA TQVDTPPSLM PKKDQVPQTC TDKSSLAKPP EKLSSSTVPP  660
SVVAEPESKP KDEASKGKSP DVATVTGTEQ Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042030001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612085.10.0PREDICTED: mucin-2-like
TrEMBLA0A078GX260.0A0A078GX26_BRANA; BnaC09g15550D protein
STRINGBo9g052030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]