PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00030872001 | ||||||||
Common Name | GSBRNA2T00030872001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 568aa MW: 61311.3 Da PI: 9.6619 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GSBRNA2T00030872001 81 FICEVCNKGFQREQNLQLHRRGH 103 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GSBRNA2T00030872001 157 WKCEKCSKRYAVQSDWKAHSKTC 179 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.05E-7 | 80 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 80 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.8E-5 | 81 | 103 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 122 | 152 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 145 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.05E-7 | 152 | 177 | No hit | No description |
SMART | SM00355 | 130 | 157 | 177 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MAASSSSNAS FFGVREEDQT HLLPPNPSAA VAPPPHHQPP QSQQPLEAPP QKKKRNQPRT 60 PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEVKRK 120 VYLCPEPTCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG 180 TKEYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNSNNNSS 240 SMMLGLSHTG PPQNLDHHSG DVLRLGSGEG VGGGAASRSS SDLIAANSSG YFMQDQNLSF 300 HDQQQGFLAA SNNIKPSPMN FQQSLMQFSH DSHNSPSSNL FNLSFLSGNN GVASATSNHN 360 AAAVSSGSTG LFPNNMINST DRTSSGAVPS LFSSSMQNPI STPQMSATAL LQKAAQMGST 420 SSNNNNNNNN GSSNNNNNNA SSILRNFGSG MYGENESNLY DLMNSFSNPD PTGNNANGVN 480 SPFGSYRGVN KGLNADKQSL TRDFLGVGQI VRSMSGSGGV QQQQQQHGNS RERVGSSSDS 540 VDRNSNTFNP GGGPATSPPY GIHHASF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 153 | 214 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 153 | 214 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00030872001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ621495 | 0.0 | AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene). | |||
GenBank | AY056174 | 0.0 | AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds. | |||
GenBank | BT001215 | 0.0 | BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129175.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q9ZUL3 | 0.0 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A078F7N8 | 0.0 | A0A078F7N8_BRANA; BnaA02g26190D protein | ||||
STRING | Bra026617.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4373 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 0.0 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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