PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00029192001
Common NameGSBRNA2T00029192001, LOC106442500
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 339aa    MW: 38502.6 Da    PI: 6.6259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00029192001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05170189120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  GSBRNA2T00029192001 170 FSCPLCFKTFNRYNNMQMHM 189
                          89*****************9 PP
2zf-C2H213.10.00029254276123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk F  k + ++H +++
  GSBRNA2T00029192001 254 FACRRCGKAFAVKGDWRTHEKNC 276
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5170189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-6236274No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5240274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSNPAYSNLF NNGFDNTNFN CSTSPSYIYN SHNSFYYPNT TNPNYMAPTT STFPNSPPLK  60
EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLDYPHDV TVDLHLGLPN YGVGGSYIAP  120
VATTDEQDDD QGVEVTVDSH LHDDDDGDLH RDHYYWIPTP DQILMGPTQF SCPLCFKTFN  180
RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCKNNIDHP RTKPLKDFRT  240
LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA  300
FGNGHISCGI DNFGGDHEDY YESASDIAQQ DDCNTNEC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00029192001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589024.10.0PREDICTED: zinc finger protein WIP5
RefseqXP_013739635.10.0zinc finger protein WIP5
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A078GIX50.0A0A078GIX5_BRANA; BnaC06g04490D protein
TrEMBLA0A0D3CPZ10.0A0A0D3CPZ1_BRAOL; Uncharacterized protein
STRINGBo6g025920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]