PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00026833001

Common Name

GSBRNA2T00026833001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 327aa MW: 37827.8 Da PI: 5.5125

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00026833001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39.2	2.2e-12	20	132	10	128
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 tde +++ yL+ ++ + ee++++ d+++ +P++ ++e+ + f +r ++ r+ sg W+ g+dk ++++ +g+ GSBRNA2T00026833001 20 TDEKMMSIYLQSINDNGESWPEEFMEDRDVFTKNPSEVF---ESENPFVVFVYPRTEAC---GRTDG-CGSGGWRIIGHDKLIKDEdTGK 102 89********999998666689**********5...33333444555555544...35665.47899*******997788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 g kk+L f +++ +g k +Wvm++yrl GSBRNA2T00026833001 103 ILGFKKILKFCGETQARGYKRTWVMQQYRL 132 89*****99*************98 PP
2	NAM	30.1	1.3e-09	207	308	33	128
NAM 33 vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy........kgr 112 + + d+y+v+P++L + +++ + + F++r ++ +sg+W+ +d++++s ++e++g k+++ fy + GSBRNA2T00026833001 207 CYVTNDVYRVHPSTLVdHeDKRSTASGLCIFANRTEACG--YT--DGCESGRWRIVEEDNAIFSMSHEVMGYKRVFKFYeedkgryfDIV 292 456679*******732233334457799999988764..33..33579*************************66533333122 PP NAM 113 apkgektdWvmheyrl 128 + + + +W+m+eyrl GSBRNA2T00026833001 293 KGEEVLRTWIMEEYRL 308 33334678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.181	11	150	IPR003441	NAC domain
Pfam	PF02365	5.8E-6	19	132	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-23	20	148	IPR003441	NAC domain
PROSITE profile	PS51005	15.401	175	324	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-20	191	322	IPR003441	NAC domain
Pfam	PF02365	3.2E-4	237	308	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEEIRAAKYP DVKDDHSKAT DEKMMSIYLQ SINDNGESWP EEFMEDRDVF TKNPSEVFES 60 ENPFVVFVYP RTEACGRTDG CGSGGWRIIG HDKLIKDEDT GKILGFKKIL KFCGETQARG 120 YKRTWVMQQY RLPSKWNPKQ DHVVCKIQLL FQTEISFLLA KHFTYSADPL PATQSLTAYG 180 IRLANQQDDG AYYLQVIFDS GGNEWPCYVT NDVYRVHPST LVDHEDKRST ASGLCIFANR 240 TEACGYTDGC ESGRWRIVEE DNAIFSMSHE VMGYKRVFKF YEEDKGRYFD IVKGEEVLRT 300 WIMEEYRLVE EAMKDKVLCV IKRGRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00026833001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513207.1	0.0	PREDICTED: uncharacterized protein LOC103829380
TrEMBL	A0A078GGW6	0.0	A0A078GGW6_BRANA; BnaA01g22280D protein
STRING	Bra035412.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60280.1	1e-119	NAC domain containing protein 23

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]