PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024833001
Common NameGSBRNA2T00024833001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 455aa    MW: 50377.9 Da    PI: 5.0569
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024833001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.1e-36251172103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k
  GSBRNA2T00024833001  25 FLSKTYDMVDDPSTDEVVSWSSGSNSFVVWNVPEFSKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQK 105
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k +
  GSBRNA2T00024833001 106 QLLKSIIRRKPT 117
                          ******999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3819109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.2E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGSISESAPT ANSSTTVVMS SIPPFLSKTY DMVDDPSTDE VVSWSSGSNS FVVWNVPEFS  60
KQFLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LKGQKQLLKS IIRRKPTQVQ  120
PPQQPQVQHS SVGACVEVGK FGLEEEVERL QRDKNVLMQE LVRLRQQQQV TEHHLQHVGQ  180
KVHVMEQRQQ QMMSFLAKAV QSPGFLNQFS QQSNNEGNQH ISESNKKRRL PVEDQKNRGG  240
SSQGLNGLSR QIVRYQSSMN ESSNSMLQQI HNMSNTHTNN HGSFLLGDVP NPNLSDNGSS  300
SNGPSGVVAF TDVSSNTTNQ VLETNLPYPQ PQADLLAPKQ GAEGGSGSPS PDLVGGERDN  360
GECLDPIMAV LDGSMMLETN ELLPGVQDSL WEQFFGESSG IGDSDELVSG SVDNELIMEQ  420
LELQPNLRNV LSNNQQMNHL TEQMGLLTSD ALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-262011915124Heat shock factor protein 1
5d5u_B1e-262011424129Heat shock factor protein 1
5d5v_B1e-262011424129Heat shock factor protein 1
5d5v_D1e-262011424129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024833001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732192.10.0heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A078J3X90.0A0A078J3X9_BRANA; BnaAnng15230D protein
STRINGBra021381.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]