PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024702001
Common NameGSBRNA2T00024702001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 400aa    MW: 44560 Da    PI: 9.3523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024702001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064342364123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00024702001 342 HECPICFRVFKSGQALGGHKRSH 364
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-5731No hitNo description
SMARTSM003550.51931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325936IPR007087Zinc finger, C2H2
PfamPF139126.1E-4932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-583110No hitNo description
SMARTSM003550.04388110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38888115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
PfamPF139121.1E-490112IPR007087Zinc finger, C2H2
SMARTSM003550.14342364IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-10342364IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974342364IPR007087Zinc finger, C2H2
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEQCQERKFA CRFCSKRFPC GKSLGGHIRT HMNHENSADS DELNNLRVDE NGGNSSYGLR  60
ENPKKNKRFV VQRSMMALKH QQHQQQLLYC RECGKGFPSS KALCGHMACH SEREKIVMDS  120
QSETEASSSP TRRRSKRVVG GSIMNQYGSA SSDDTGIEPE QEEMALSLMM MSRDSSFKKG  180
HNMAESSDYS VILETKSSSG EQLKKFCKQD KLGGVDVLYE SDNSDSGYFR NGPKKLDSDV  240
SVDAGFINNA AMGLNNRFRK ERSGTGSGRS STKYDLRKSK RGFPCYGRKK TKYELAESVY  300
DSGDQLSLET ESCADTIKIH SNRSTMVKKA SGGGAKKKSK GHECPICFRV FKSGQALGGH  360
KRSHFLGNHE HRTLVIQQQH QVAHEMHTLI DLNLPAPID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024702001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894291e-129AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609661e-129HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627343.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013627344.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A078GFN80.0A0A078GFN8_BRANA; BnaC03g57380D protein
TrEMBLA0A0D3BHZ70.0A0A0D3BHZ7_BRAOL; Uncharacterized protein
STRINGBo3g137110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]