PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024221001
Common NameGSBRNA2T00024221001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 552aa    MW: 58116.6 Da    PI: 10.2355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024221001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.4e-11187231144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                          r++W++eEde l+ avk++G g+W tI+++     Rt  q+  rw
  GSBRNA2T00024221001 187 RKKWSAEEDEELIAAVKRHGEGSWVTISKEEFeGERTVSQLSQRW 231
                          789*************************98666678888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.21182239IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-13183232IPR009057Homeodomain-like
SuperFamilySSF466891.15E-11184237IPR009057Homeodomain-like
SMARTSM007178.8E-10186237IPR001005SANT/Myb domain
PfamPF002492.8E-8187231IPR001005SANT/Myb domain
CDDcd116601.52E-11188231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MIDRKRKEFI SEEDMATLLQ RYDTMTILQL LQEMAYYAEP KMDWNEMVKK TSTGITSARD  60
YQLLWRHLAY RDSLLPNAQS LDDDSDMECE LETSPAVNVD AVSEAVAHVK VIASSFVPSD  120
LDIPEDSTFE APLTINIPYG HRGPQEPSDS YWSSKGMNIT FPISLQKAAE GHNGNGLASS  180
VAARKKRKKW SAEEDEELIA AVKRHGEGSW VTISKEEFEG ERTVSQLSQR WGFLRKRGDT  240
SNSSTQSGLH RTEEQMAANR ALSLAVGNRV PSKKAAVGIP PVRTSGTITG AQANGANNGN  300
SLQGQQQSQP VVQATPRVAT SIPTTKSRVP AKKTTANSTS RSALMVTANS VAAAACMSGL  360
ATTASVPKVE PVIKASPAAA SFPRPSAISS ALNAEPVKKA SPSATSFPRP SGISSALNAE  420
RVKAASAASF PRPSGISSAP NVVPVKTASA AILPRPLGVT SASKAEPFKT APVAFLPRPS  480
GTISAPNAEP VKAASAVSLP RPSSIISASK TEPVKSVAAA GPSNVRNAVT GSPRHVLSSS  540
PMAPFSKGPT I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024221001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102727.20.0PREDICTED: LOW QUALITY PROTEIN: cell wall protein AWA1
TrEMBLA0A078GEQ60.0A0A078GEQ6_BRANA; BnaA01g21650D protein
STRINGBo1g087910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]