PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023396001
Common NameGSBRNA2T00023396001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 301aa    MW: 34319.4 Da    PI: 5.0106
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023396001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.7e-10177259280
                          EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T.T-EE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke.gDfv 80 
                          +k+lt+sdv++++ l+l+++ +++         +g ke++   t++ ++g++ e+ +  rkk++++ lt GW  Fv++ gLke  Dfv
  GSBRNA2T00023396001 177 QKQLTTSDVTQNR-LSLSNSQVRKKfqqllgdeSGRKESG--FTVYGPDGKVHEIWV--RKKKRSFDLTIGWWTFVEQYGLKEcCDFV 259
                          79*******9985.**********9*****9885566665..8888***********..**********************9614555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-9174264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-9176265IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-9176264No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASQTQDEEE VHHRKKEDAL DEEPELIDLN IEAKHEDDDN IVASESSETR EAKRQKVEQE  60
VKDANQEDDA KKIAASESAA TSQQEVKDAI TMMVPSTTTP RSLTQEEAKA KEDDARASRM  120
LASTSKDLVR PGLEINDYDV DDSEQTLMFL TRWKAPETPP EKIIHRSLVE QCSRPIQKQL  180
TTSDVTQNRL SLSNSQVRKK FQQLLGDESG RKESGFTVYG PDGKVHEIWV RKKKRSFDLT  240
IGWWTFVEQY GLKECCDFVT VWMFMHSVTR RICLAVDVTR FAFRKQVSKR ISQAAFDDSA  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023396001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635528.10.0PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A078K2B50.0A0A078K2B5_BRANA; BnaCnng75730D protein
TrEMBLA0A3P6CBZ70.0A0A3P6CBZ7_BRAOL; Uncharacterized protein
STRINGBra005015.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1630655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-29B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]