PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019362001
Common NameGSBRNA2T00019362001, LOC106377039
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 338aa    MW: 38269.4 Da    PI: 8.1052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019362001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05180199120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  GSBRNA2T00019362001 180 FACSICSKTFTRYNNMQMHM 199
                          78*****************9 PP
2zf-C2H210.90.0014265287123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cgk    k + ++H +++
  GSBRNA2T00019362001 265 FSCGKCGKALAVKGDWRTHEKNC 287
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-9160203No hitNo description
Gene3DG3DSA:3.30.160.603.8E-6180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SMARTSM00355170228260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.38E-5250285No hitNo description
Gene3DG3DSA:3.30.160.608.8E-4251285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190265285IPR015880Zinc finger, C2H2-like
SMARTSM00355180291314IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNLDERGLGF ESSSFLAWLR ASSNSSSPSG LFRMKTQDVV SRSYHQSQMK LERSLFLYQP  60
QAPLSTSTIQ CLPLLNKLME DESQASDDIK EEMDDDVVTL RIGLPTYHRG SSEEDDSDTT  120
SDHHQEKSIK REMIEDGGVM MKKMRTMKFQ QEMIDSDMGV CGKRFWIPSP AQIHVGPMQF  180
ACSICSKTFT RYNNMQMHMW GHGSEFRKGA DSLKGTTQPA AILRLPCYCC AEGCKNNINH  240
PRAKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK  300
HKRSLKDHIK SFGHGHSPHP SLSFDGFEED VECVTTE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019362001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599634.10.0PREDICTED: zinc finger protein WIP3-like
RefseqXP_013672648.10.0zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A078G8A70.0A0A078G8A7_BRANA; BnaC08g43240D protein
TrEMBLA0A0D3DYF70.0A0A0D3DYF7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G1550.0A0A3P6G155_BRAOL; Uncharacterized protein
STRINGBo8g112550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]