PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018374001 | ||||||||
Common Name | GSBRNA2T00018374001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 553aa MW: 62651.2 Da PI: 5.1545 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.7 | 2.8e-20 | 8 | 137 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatg 87 +F+Pt+ el++ + v+gk++++ i+++ ++y+ Pw L+ ++v+ +e+ew++F++r+k+ ++r++r + +sg+Wk++g GSBRNA2T00018374001 8 HFKPTNFELLNILHWRLVRGKRCSF---ITDMqNLYERAPWLLQhvRHVRFRENEWFYFVRRNKRPGmqkaDSTRPSRtVGESGIWKTSG 94 7*********998889999999877...777769*********94337777999*******999755433367799996667******** PP NAM 88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++++++g++vg+k+ + f +++ ++g t W+mhe+ l GSBRNA2T00018374001 95 VVAQIKNQDGANVGTKRHISFKakSATVKDGITTGWTMHEFVL 137 *********************94334668999*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.996 | 3 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.05E-22 | 8 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-9 | 8 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MKGTRRSHFK PTNFELLNIL HWRLVRGKRC SFITDMQNLY ERAPWLLQHV RHVRFRENEW 60 FYFVRRNKRP GMQKADSTRP SRTVGESGIW KTSGVVAQIK NQDGANVGTK RHISFKAKSA 120 TVKDGITTGW TMHEFVLDEP WFQEVVLCRI RFYKRKDNAQ YAPRFLPIVI GRERGDSIHH 180 GVAAAAGEEL QYSNAPVETH EAQGMEQWTG SCSREVVSYL ARQQIMVQDS NYTILNGGGM 240 MQHQDFGSYG QHFSVNGRME KHLDFGSYGQ LSGEFLGQQQ DHILAGQATY VSHMEDHQQQ 300 SHNLLGGHGT DPSHSAQTME EDQQQWNGFW GPYSAQPYDQ GMMENQDFES SALGLAQNHQ 360 CSGQNNDLSA LSEPAAQQQH LGEGSNLSGP SQVQVMMNQA LVEQHYVPWS AQANDQYKEH 420 NNELPTVPME TQHQQHDNVI INSAAQLHLE AQDNVPLINE TMEAQATDLP VNQGIDESHG 480 GIVGSPTYRE LYQEFLGEEE MGSEMDNIWN DVLNEEWVQK LGKNTPEEEA ELIADLTNCE 540 TFESFLDSLL SN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018374001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189621 | 0.0 | AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111333.1 | 0.0 | PREDICTED: uncharacterized protein LOC103836792 | ||||
TrEMBL | A0A078G6E5 | 0.0 | A0A078G6E5_BRANA; BnaA09g00440D protein | ||||
STRING | Bra036304.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14424 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 3e-14 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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