PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018373001

Common Name

GSBRNA2T00018373001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 412aa MW: 46977.1 Da PI: 4.4912

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018373001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28.6	4e-09	4	74	6	77
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknra 77 +F+Pt+ +lv + L+ ++e+++ + +i+++ ++y+ ePw L+ ++++ +e++w++F++++k+ a +kr++r+ GSBRNA2T00018373001 4 HFNPTNVDLV-NMLRWRIEREQPSG--FITDMhNLYEKEPWLLQhvRHISFNENDWFYFTRTKKA-ADSKRPSRK 74 8*******.88999999999766..678877********9433666689999999988776.567888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-13	4	116	IPR003441	NAC domain
Pfam	PF02365	1.8E-4	4	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MCSHFNPTNV DLVNMLRWRI EREQPSGFIT DMHNLYEKEP WLLQHVRHIS FNENDWFYFT 60 RTKKAADSKR PSRKHFSFKA KSETVYDGIT TGWVIHEFIL EDKPGFQELV LCRIRFCKRE 120 DNAQYAPRLT PIVIGLEQED GVAAAAAPVE THQAQGMEQW TGSCSGEAVT YSGPQQTMAQ 180 GSNYPILSAG GMEKHQEFGY YGQQHNHILG QMKQYGQGIG DMVEYQNQYL GQQQNHILGR 240 QATYVSPSAQ TMEEDQQQWN GYFGPYSAQP YDQGMMEQQD FGSSVLGLAQ NEQYLGQNSE 300 LPPVPMKKTL QQHDNNVIRN SAANLQLEDQ ENVVIDFLMN EDFIELHEGI VGSPTDKELI 360 QETESEMVNF GNEEWAQQLG QNTPEEEAEL HAALANCETF ESFLNFFCPT K*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MCSHFNPTNV DLVNMLRWRI EREQPSGFIT DMHNLYEKEP WLLQHVRHIS FNENDWFYFT  60
RTKKAADSKR PSRKHFSFKA KSETVYDGIT TGWVIHEFIL EDKPGFQELV LCRIRFCKRE  120
DNAQYAPRLT PIVIGLEQED GVAAAAAPVE THQAQGMEQW TGSCSGEAVT YSGPQQTMAQ  180
GSNYPILSAG GMEKHQEFGY YGQQHNHILG QMKQYGQGIG DMVEYQNQYL GQQQNHILGR  240
QATYVSPSAQ TMEEDQQQWN GYFGPYSAQP YDQGMMEQQD FGSSVLGLAQ NEQYLGQNSE  300
LPPVPMKKTL QQHDNNVIRN SAANLQLEDQ ENVVIDFLMN EDFIELHEGI VGSPTDKELI  360
QETESEMVNF GNEEWAQQLG QNTPEEEAEL HAALANCETF ESFLNFFCPT K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018373001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189621	0.0	AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607456.1	1e-144	PREDICTED: uncharacterized protein LOC106314055
TrEMBL	A0A078G9I1	0.0	A0A078G9I1_BRANA; BnaA09g00430D protein
STRING	Bra036305.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14424	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	1e-11	NAC domain containing protein 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]