PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018364001 | ||||||||
Common Name | GSBRNA2T00018364001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 709aa MW: 81121.2 Da PI: 6.1889 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.6 | 1e-18 | 10 | 136 | 9 | 128 |
NAM 9 PtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdk 90 Pt+ +l + L++++e++k + +i+++ d+y+ ePw L+ ++v+ +++ w++F++r+++ a ++r++r ++ksg+Wk+tg + GSBRNA2T00018364001 10 PTNIDLT-NILRQRIEKNKRPS--FITDMhDLYEKEPWLLQhvRHVSFDDNLWFYFVTRKQHPAikkiDSNRPSRkVAKSGRWKTTGLLN 96 6677776.77999999999777..677777**********95336667999**99999988766554456799997899*********** PP NAM 91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +k+g vg kt+ + ++++++g+ t Wvmhe+ l GSBRNA2T00018364001 97 YIENKDGVRVGSLKTISYKanSETEKDGVTTGWVMHEFVL 136 ******************9544578899**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.736 | 1 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-21 | 10 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-8 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MTRGSQIQGP TNIDLTNILR QRIEKNKRPS FITDMHDLYE KEPWLLQHVR HVSFDDNLWF 60 YFVTRKQHPA IKKIDSNRPS RKVAKSGRWK TTGLLNYIEN KDGVRVGSLK TISYKANSET 120 EKDGVTTGWV MHEFVLDKPG FQELALCRIR FRKRKDNAQY APRLTPIVIG LGRELDGAKL 180 VENNSQNHMT SVHHGVAAPV ETHEAQGMEQ WIGSCSGEAI SNLALQHQNI MGHDLNYPIF 240 YGGMKKHQDF RSYGQQKNPI LGHMKQYDQG SGDRVEYQNQ YLGQETMDPN KVPMMENRAL 300 NEKQWWNEYS GHLPSQHQHF SLNGSKEQHQ IMGSCGGFLG ESSGQKQHHI RGSQETYLSL 360 MEVQQQCHNY FWGQETGTSH SAQAMEEKQQ WSEYLGQETM DPQQGLNEKQ RWNEYWGHLP 420 SQHQFFSMNG SKEQHQSLSS CGKFLGESSG QQQHCIRGRQ ATSLMEVQTQ PCHNYFWGQE 480 TGTSHSAQAM EEKQQCNEYS GLYSVQPYVQ RMMGHQIFGS SALSMAQNDQ YMRQNNDLLA 540 AQQKNLSNLP LTQQQNMIPG QATLNVPCSA QPYDQYKEQT NELPRVPMET QQPQNKELPT 600 VSMKTQQQQQ NNELPTVSLK TQPQEDNIVR NSAGQLHLEA QDDVPLIDQT MDEQATDPPT 660 GNELFQDFLG DDTFQEMDPE MANLPDDFCV ADLAQEFEKI PIPYSLLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018364001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189621 | 0.0 | AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022566760.1 | 1e-178 | mediator of RNA polymerase II transcription subunit 15 | ||||
TrEMBL | A0A078GAH5 | 0.0 | A0A078GAH5_BRANA; BnaA09g00360D protein | ||||
STRING | Bra036314.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14424 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 4e-11 | NAC domain containing protein 86 |
Publications ? help Back to Top | |||
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