PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018364001
Common NameGSBRNA2T00018364001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 709aa    MW: 81121.2 Da    PI: 6.1889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018364001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.61e-18101369128
                  NAM   9 PtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdk 90 
                          Pt+ +l  + L++++e++k +   +i+++ d+y+ ePw L+  ++v+ +++ w++F++r+++ a     ++r++r ++ksg+Wk+tg  +
  GSBRNA2T00018364001  10 PTNIDLT-NILRQRIEKNKRPS--FITDMhDLYEKEPWLLQhvRHVSFDDNLWFYFVTRKQHPAikkiDSNRPSRkVAKSGRWKTTGLLN 96 
                          6677776.77999999999777..677777**********95336667999**99999988766554456799997899*********** PP

                  NAM  91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +k+g  vg  kt+ +   ++++++g+ t Wvmhe+ l
  GSBRNA2T00018364001  97 YIENKDGVRVGSLKTISYKanSETEKDGVTTGWVMHEFVL 136
                          ******************9544578899**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7361152IPR003441NAC domain
SuperFamilySSF1019414.05E-2110152IPR003441NAC domain
PfamPF023652.1E-810136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MTRGSQIQGP TNIDLTNILR QRIEKNKRPS FITDMHDLYE KEPWLLQHVR HVSFDDNLWF  60
YFVTRKQHPA IKKIDSNRPS RKVAKSGRWK TTGLLNYIEN KDGVRVGSLK TISYKANSET  120
EKDGVTTGWV MHEFVLDKPG FQELALCRIR FRKRKDNAQY APRLTPIVIG LGRELDGAKL  180
VENNSQNHMT SVHHGVAAPV ETHEAQGMEQ WIGSCSGEAI SNLALQHQNI MGHDLNYPIF  240
YGGMKKHQDF RSYGQQKNPI LGHMKQYDQG SGDRVEYQNQ YLGQETMDPN KVPMMENRAL  300
NEKQWWNEYS GHLPSQHQHF SLNGSKEQHQ IMGSCGGFLG ESSGQKQHHI RGSQETYLSL  360
MEVQQQCHNY FWGQETGTSH SAQAMEEKQQ WSEYLGQETM DPQQGLNEKQ RWNEYWGHLP  420
SQHQFFSMNG SKEQHQSLSS CGKFLGESSG QQQHCIRGRQ ATSLMEVQTQ PCHNYFWGQE  480
TGTSHSAQAM EEKQQCNEYS GLYSVQPYVQ RMMGHQIFGS SALSMAQNDQ YMRQNNDLLA  540
AQQKNLSNLP LTQQQNMIPG QATLNVPCSA QPYDQYKEQT NELPRVPMET QQPQNKELPT  600
VSMKTQQQQQ NNELPTVSLK TQPQEDNIVR NSAGQLHLEA QDDVPLIDQT MDEQATDPPT  660
GNELFQDFLG DDTFQEMDPE MANLPDDFCV ADLAQEFEKI PIPYSLLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018364001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896210.0AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566760.11e-178mediator of RNA polymerase II transcription subunit 15
TrEMBLA0A078GAH50.0A0A078GAH5_BRANA; BnaA09g00360D protein
STRINGBra036314.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.14e-11NAC domain containing protein 86
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]