PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015584001
Common NameGSBRNA2T00015584001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 340aa    MW: 38604.9 Da    PI: 8.2671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015584001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002794117123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ C+++F  ++ L  H r  H
  GSBRNA2T00015584001  94 YFCGVCDRRFYANEKLIAHFRQiH 117
                          78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.1E-530128IPR029060PIN domain-like
PfamPF019361.5E-735247IPR021139NYN domain, limkain-b1-type
SuperFamilySSF576677.96E-592121No hitNo description
PROSITE profilePS5015710.94994122IPR007087Zinc finger, C2H2
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
CDDcd061671.77E-10160246No hitNo description
Gene3DG3DSA:3.40.50.10101.1E-5179249IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MFSRFLHRIR SSKTPITSLN SIKPFTSLNP KPPTRVAVFW DLDNKPPASH PPHDAAVKLR  60
TAASSFGSVK LMVAYANRHA FSYNTGLAKP AEPYFCGVCD RRFYANEKLI AHFRQIHETE  120
NQKRVRQIEA AKGHQRVRLV AKYSMKMEKY KRAARNVLTP KEGYGLADEL KRGGFWVKMV  180
SDKPEAADRA LKEHMVDVMD RREAECLVLV SDDSGFAEVL WEAKERCLRT VVIGDLSEGK  240
LKRVADVAYS WKEVVMGKAK KEVEKVVGKW RDRDVLKKLE WSYDPVLEKE RGFCCGDWDY  300
GFDSDGDDDE VENGAEMGDG GDWWEMDDED GAGSSRPCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015584001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623406.10.0PREDICTED: uncharacterized protein LOC106329312
TrEMBLA0A078G7880.0A0A078G788_BRANA; BnaC03g29480D protein
STRINGBo3g045630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-163C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]