PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015428001
Common NameGSBRNA2T00015428001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 431aa    MW: 49657.9 Da    PI: 5.5436
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015428001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-3198353128
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v   +++++g+kktLv+y+grap+g +t Wvmheyrl
  GSBRNA2T00015428001   9 SKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 83 
                          5789*************************************9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.231107IPR003441NAC domain
SuperFamilySSF1019414.05E-379107IPR003441NAC domain
PfamPF023651.4E-151283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIGKALLPSK DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT  60
LVYYRGRAPH GIRTGWVMHE YRLDETQCEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS  120
YVHAMSNVSG NSSFDACSDL EISSTTHQVQ NAFQPRFGNG RFNSNAMISN EDWSQYYGSS  180
YAPFPTPYKV NNEIECSMLQ HNMSLPPLRV ENSAVSDCDF FTSMTQNNNH GVLEDFTFAT  240
SGSNHYNSVG DQVIHIGNYD EPPSMMSNHH MNQGYTEEQK IISTLDDTEQ DLGYHGDNTN  300
DNINIDDFFS FDIYNEENIN QVEGNEEEVN TNETLDSSHF EVVEEETRFN NQMLISTYQT  360
TKILYHQVVP SHTLKVHINP INHNVEERTL FIEEEDNDSW LQRAEKITKK KLTLVGVMAQ  420
QCYKYLAIFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-31610761165NO APICAL MERISTEM PROTEIN
1ut4_B6e-31610761165NO APICAL MERISTEM PROTEIN
1ut7_A6e-31610761165NO APICAL MERISTEM PROTEIN
1ut7_B6e-31610761165NO APICAL MERISTEM PROTEIN
3swm_A6e-31610764168NAC domain-containing protein 19
3swm_B6e-31610764168NAC domain-containing protein 19
3swm_C6e-31610764168NAC domain-containing protein 19
3swm_D6e-31610764168NAC domain-containing protein 19
3swp_A6e-31610764168NAC domain-containing protein 19
3swp_B6e-31610764168NAC domain-containing protein 19
3swp_C6e-31610764168NAC domain-containing protein 19
3swp_D6e-31610764168NAC domain-containing protein 19
4dul_A6e-31610761165NAC domain-containing protein 19
4dul_B6e-31610761165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015428001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119137.10.0PREDICTED: NAC domain-containing protein 45
SwissprotA4VCM00.0NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A078G7210.0A0A078G721_BRANA; BnaA01g34470D protein
STRINGBra021366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.10.0NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]