PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015266001
Common NameGSBRNA2T00015266001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 347aa    MW: 39078.7 Da    PI: 6.9007
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015266001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.2e-31180235156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmk++gLt+++vkSHLQkYRl+
  GSBRNA2T00015266001 180 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIKELMKIDGLTNDEVKSHLQKYRLH 235
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.64177237IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-26179238IPR009057Homeodomain-like
SuperFamilySSF466898.07E-17179238IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-28180235IPR006447Myb domain, plants
PfamPF002494.6E-6182233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIKKLSNMDY KQKQERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPGTA  60
TENMYGQSEC SEQTTGECTP VLEQFLTIKD SSTSNEEEEL DDEHGNHDPD NDYEDKNMKS  120
DWLKSVQLWN QPDPLLPKEE GTQEKMVDTV VKKDESMKKE AMANGGERRK REAEKDGGRK  180
QRRCWSSQLH RRFLNALQHL GGPHVATPKQ IKELMKIDGL TNDEVKSHLQ KYRLHTRRPS  240
QTVSNNGNSQ AQHLVVVEGI WVPKSDHSTG RITGGATTSG TTTRSTTGIY GAMAAPPLPQ  300
WPSPSNFRPS IIVEEKGSGS PSEEVVFRCS SPAMSSSTRN HYVKNI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the root hair region and root hair cells. {ECO:0000269|PubMed:19341407}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015266001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110590.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FX670.0HRS1_ARATH; Transcription factor HRS1
TrEMBLA0A078G6M40.0A0A078G6M4_BRANA; BnaA08g24340D protein
TrEMBLM4DJQ60.0M4DJQ6_BRARP; Uncharacterized protein
STRINGBra016734.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135081728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.10.0G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  3. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]