PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012726001
Common NameGSBRNA2T00012726001, LOC106425594
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 384aa    MW: 42824.4 Da    PI: 7.6092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012726001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-14221001196
                          HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + ++ l++p  f+ +h  g + + ++    +d s ++W+v++  ++ +    lt GW++F+ a++L++gD++vF+++g+ ef  +v++
  GSBRNA2T00012726001  22 FHTH-LTIPVAFFLKHvqGRNDQIKIAKLTTDASDNTWTVRM--DGLK----LTHGWEDFALAHDLRVGDMIVFRHEGELEF--HVTA 100
                          4455.9**********9744433433334466999*******..6666....***********************8775444..7765 PP
2B365.77.1e-21138229598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++s++l+++rl+lp +fa+++g++k ++ +++l +e+grsW++kl+++k++ +++++ GW++F+ +ng+  g   ++kl++ +++ +v+
  GSBRNA2T00012726001 138 KVSSSNLRLDRLYLPMSFARTNGLDKMSGEEIILLNEEGRSWSLKLKHDKSDMHTFIRPGWRRFCAENGMSHGHY-TLKLVR-NSGPPVI 225
                          5689*********************************************************************96.999987.7777999 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          k++ 
  GSBRNA2T00012726001 226 KLCG 229
                          9986 PP
3B366.63.5e-21253343698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++s++lk++ l+l kkf++e+g++  +s +++l++e+g +W++ l+   + ++++l+ GW+ F++ ng+k+gD++ Fkl+g ++ ++v+ 
  GSBRNA2T00012726001 253 VTSNSLKTDKLYLGKKFVSENGLDRGCS-EVVLKNEWGGRWSLALRCYESAKQTYLGPGWRTFCQVNGIKVGDSFKFKLVG-TGDNPVLL 340
                          68999*******************8887.****************99999999**************************99.55557777 PP

                          EE- CS
                   B3  96 vfr 98 
                          ++ 
  GSBRNA2T00012726001 341 LCT 343
                          775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-209114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2011111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.33511104IPR003340B3 DNA binding domain
CDDcd100174.75E-151299No hitNo description
SMARTSM010198.9E-1914104IPR003340B3 DNA binding domain
PfamPF023622.7E-92498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-17130224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-15131228IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-15134228No hitNo description
PROSITE profilePS5086313.183134231IPR003340B3 DNA binding domain
SMARTSM010193.3E-26135231IPR003340B3 DNA binding domain
PfamPF023621.2E-19137229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16246342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.085248344IPR003340B3 DNA binding domain
SMARTSM010194.3E-18249345IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-17253347IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-20253344IPR003340B3 DNA binding domain
CDDcd100171.85E-16255342No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEDLSLHSPV KPHFFQPLLP GFHTHLTIPV AFFLKHVQGR NDQIKIAKLT TDASDNTWTV  60
RMDGLKLTHG WEDFALAHDL RVGDMIVFRH EGELEFHVTA LGPSCCEIQY TSSHNINHNQ  120
TNNIDACSLS DHSRFVAKVS SSNLRLDRLY LPMSFARTNG LDKMSGEEII LLNEEGRSWS  180
LKLKHDKSDM HTFIRPGWRR FCAENGMSHG HYTLKLVRNS GPPVIKLCGQ VHNRPKQVPV  240
VSSLHHSCSV GSVTSNSLKT DKLYLGKKFV SENGLDRGCS EVVLKNEWGG RWSLALRCYE  300
SAKQTYLGPG WRTFCQVNGI KVGDSFKFKL VGTGDNPVLL LCTRKTPLEC PEESSGSDTS  360
SGDDSSKSQE SEEESLGDKN ISQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012726001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085631e-82AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562372.10.0B3 domain-containing protein REM17-like
SwissprotQ84WP31e-146REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078G2310.0A0A078G231_BRANA; BnaC07g12370D protein
STRINGBo7g054160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-145B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]