PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00011519001 | ||||||||
Common Name | GSBRNA2T00011519001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38326.7 Da PI: 5.8398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.1e-10 | 182 | 230 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq GSBRNA2T00011519001 182 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 230 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-17 | 177 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-11 | 177 | 234 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 179 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-17 | 180 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-7 | 182 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 185 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGGESNNEGE MGLNHGHDPS MPLYAKTDPY FSSSDWDPVV NGGGFSSSHY PSVVMDNPGM 60 SCFTHYQSGS GYPDMPASLL PFGDCGGGGE SVGRLMRAGE SHDQVLDDGV LGASPTRKRR 120 QAEAESQRNK KAVEEYQEDT QRGSDQSQKK HKDGQNKESS QSEEAPKENY IHMRARRGQA 180 TNSHSLAERV RREKISERMR LLQELVPGCN KITGKAVMLD EIINYVQSLQ QQVEFLSMKL 240 ATVNPEVNID IDRIIAKDLL QPRDRNTPTL GLSPFTSFHG TIPNISTTAN PQYNSLPQTT 300 LESELQSLYQ MGFVSNPSTM SSFSPNNGKL KATQTCFCLF PFLCCLD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | TRKRRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.18357 | 5e-55 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00011519001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221806 | 0.0 | AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04. | |||
GenBank | AK229309 | 0.0 | AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01. | |||
GenBank | AK230347 | 0.0 | AK230347.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07. | |||
GenBank | BT012655 | 0.0 | BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013716120.1 | 0.0 | transcription factor bHLH74 | ||||
Swissprot | Q6NKN9 | 0.0 | BH074_ARATH; Transcription factor bHLH74 | ||||
TrEMBL | A0A078IWS6 | 0.0 | A0A078IWS6_BRANA; BnaA09g57260D protein | ||||
STRING | Bra031700.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5196 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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