PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00001418001 | ||||||||
Common Name | GSBRNA2T00001418001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 36742.9 Da PI: 8.7335 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l +++++G+g +W + + + g++R++k+c++rw++yl GSBRNA2T00001418001 14 RGPWSPEEDSKLRGYIEKYGNGgNWISFPLKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.3e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++ GSBRNA2T00001418001 69 GDFSEEEDRIIFSLFAAIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.945 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.18E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.362 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.17E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGRAPCCDKT KVKRGPWSPE EDSKLRGYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR TDNDIKNYWN TKLRKKLMSS 120 SSFSHSSSAM TSPFLNPNSQ DVKRPSTTIS PSSYNPYFEN PTKALISNID GFEADNHQIF 180 PFVNPNYPQD ISLSESSNNN ISGTSGFSLN HNMCGHYSNH NHFSSDVSGN RSEIIMKQEE 240 IMMLMMIDNH IDQRTKGYNG DFTQGYYSNF INGHGDLKQM ISGTGTNSNI NMGGSGSESA 300 SSSSSISNLA ENKSSGSLLQ HKCLPYFYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 117 | 7 | 108 | B-MYB |
1gv2_A | 2e-26 | 14 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-26 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. Later, expressed transiently at the center of the boundary between the SAM and developing leaf primordia. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also present in shoot tips and flower buds. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00001418001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126579.1 | 0.0 | PREDICTED: transcription factor RAX1 | ||||
Swissprot | Q9FG68 | 1e-169 | RAX1_ARATH; Transcription factor RAX1 | ||||
TrEMBL | A0A078F826 | 0.0 | A0A078F826_BRANA; BnaA02g06100D protein | ||||
TrEMBL | A0A3P6A9P7 | 0.0 | A0A3P6A9P7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DUN5 | 0.0 | M4DUN5_BRARP; Uncharacterized protein | ||||
STRING | Bra020228.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14013 | 16 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23000.1 | 1e-156 | myb domain protein 37 |
Publications ? help Back to Top | |||
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