PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001412001
Common NameGSBRNA2T00001412001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 325aa    MW: 37107.2 Da    PI: 8.5013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001412001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.5e-07166188123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F+r  nL+ H+r H
  GSBRNA2T00001412001 166 HYCQICGKGFKRDANLRMHMRAH 188
                          68*******************99 PP
2zf-C2H213.30.00025288303621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg++Fsrk+ L++H +
  GSBRNA2T00001412001 288 CGTTFSRKDKLMSHVS 303
                          **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-6165191No hitNo description
SMARTSM003550.0028166188IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-6166193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632166193IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SMARTSM00355230218251IPR015880Zinc finger, C2H2-like
SMARTSM0035555256278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNQEDHMNQG DHIMNNGEGS MPCFSETTIT SSNHLYPMTA ATKSSEEDHS ISLSLLLNLS  60
TIQDKVHHIQ SLVSFFMISN NNQSSESTSS LAVANIESLV QEIVTAATSM MLTCQQRHIH  120
LITTNLDWHG TQSINPKKDQ HRFKTRPGNY EILELGADDL LAKFTHYCQI CGKGFKRDAN  180
LRMHMRAHGD EYKTREALIS PTSHDKKVEE HSLMRHYYSC PQHGCRWNQR HEKFQPLKSV  240
ICAKNHYKRS HCPKMYMCRR CNVKHFSVLS DLRTHEKHCG DIKWVCSCGT TFSRKDKLMS  300
HVSLFVGHSP VHGPPPQQRP IITI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001412001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052431e-179AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277401e-179AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankBT0048101e-179BT004810.1 Arabidopsis thaliana At5g22890 gene, complete cds.
GenBankCP0026881e-179CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616912.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-158STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A078F8200.0A0A078F820_BRANA; BnaA02g06050D protein
STRINGBo2g024540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-148C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]