PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00001411001 | ||||||||
Common Name | GSBRNA2T00001411001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 370aa MW: 42171.3 Da PI: 7.9381 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.7e-07 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H GSBRNA2T00001411001 212 HYCQICGKGFKRDANLRMHMRAH 234 68*******************99 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 333 | 348 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L++H + GSBRNA2T00001411001 333 CGTTFSRKDKLMSHVS 348 **************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.65E-6 | 210 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-6 | 212 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 212 | 234 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 212 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 263 | 296 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 33 | 301 | 323 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MNQGDHIINN GEGSVCCFSE TTTTSSNPVY NNPMTAATKS SEDEDDISLS LLLNLSTMQN 60 KVHQIKSLVS FFMISTNNNN QSTESTSYLA VANIESLVQD IITAANSMMF TCQQLHISSN 120 NNSNFDNDKI VTDFSPRVID RHNDFTRESS ANFLGVQERG RSSFLDQTTQ NLDWYGTQTI 180 NPKKEDHRYK SRSGDYELVE LGVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT 240 REALISPTSH DKEVECSSTR HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM 300 YMCRKCNVKH FSVLSDLRTH EKHCGDVKWI CSCGTTFSRK DKLMSHVSLF LGHSPVHCQP 360 PQHPIIHYT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00001411001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005243 | 1e-176 | AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17. | |||
GenBank | AK227740 | 1e-176 | AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16. | |||
GenBank | BT004810 | 1e-176 | BT004810.1 Arabidopsis thaliana At5g22890 gene, complete cds. | |||
GenBank | CP002688 | 1e-176 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013705633.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like | ||||
Swissprot | Q0WT24 | 0.0 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A078FBC9 | 0.0 | A0A078FBC9_BRANA; BnaA02g06040D protein | ||||
TrEMBL | A0A398A7X2 | 0.0 | A0A398A7X2_BRACM; Uncharacterized protein | ||||
STRING | Bo2g024530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-166 | C2H2 family protein |
Publications ? help Back to Top | |||
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