PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G828396_P01 | ||||||||
Common Name | IDP168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 42836.7 Da PI: 5.1988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.6e-09 | 204 | 251 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq GRMZM5G828396_P01 204 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 251 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-16 | 198 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.84E-10 | 198 | 255 | No hit | No description |
PROSITE profile | PS50888 | 15.301 | 200 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-16 | 200 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 204 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-10 | 206 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MKEGRPGAGD YIASLLSSSP RLDFGGEEEE DCLDRFCGDP GFAARAARLS SFSGQRFAVT 60 AGLFGLPPPL PAASGGGEFA GSREASSVSD PASAMKDANA KKRKAPAAAA AKGKGREPSA 120 QAQAGEPKGP DAKRCCKAEG GEGEEGSPVK LPKPEQAGSD SSVEDGGAQN QKPPPPVKGK 180 NAKPVEPPRD YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC NKVIGKALML 240 DEIINYVQSL QRQVEFLSMK LATVNPLDLS NLPTLLQKDM FQACGASASS VFSLESCSPG 300 FPFGGQGDVF QSFVPNGLEN PCGGLNPLDL ALSQATGGQF GFQDGTAGTN LQQRNYWEEE 360 EEDLQSVFHI DDNGQSQEHG ASASAQSFHG QLQPQEGHMK MEFF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.40361 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G828396 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G828396_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036118 | 0.0 | BT036118.1 Zea mays full-length cDNA clone ZM_BFb0096I10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132323.1 | 0.0 | uncharacterized protein LOC100193765 | ||||
TrEMBL | B4FG80 | 0.0 | B4FG80_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM5G828396_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 2e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G828396_P01 |
Entrez Gene | 100193765 |