PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G801627_P01 | ||||||||
Common Name | Zm.82267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 394aa MW: 42104.2 Da PI: 7.9089 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.8e-09 | 117 | 138 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg GRMZM5G801627_P01 117 AACPDFRK-GGCKRGDACEFAHG 138 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-5 | 113 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-7 | 117 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 119 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 27 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.751 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MMMMMGERAH APPWQRSPAA SGVTDADDAS PYALLAALQH YLPSNEVAAY DEDDEEAALA 60 AATAAVDAYA CDEFRMYEFK VRRCSRGRNH DWTACPYAHP GEKARRRDPR RYHYSGAACP 120 DFRKGGCKRG DACEFAHGVF ECWLHPSRYR TQPCKDGTGC RRRVCFFAHT PDQLRVPPPR 180 QSSPRGAAAA ASPLAESYDG SPLRRQAFES YLTKSGIVSS PPPTSTLVSP PRSPPSESPP 240 MSPDAAAALR RGSWPGVGSP VNEVLASMRQ LRLGGGSPRS APSGGSFLGG GYPFGSPKSP 300 AGLYSLPSTP TRPSPVTVTT ASGATVLTVE RLNLGLIGDE EPVMERVESG RALREKVFER 360 LSKEAAVPSD TAASANVEGA APAPDVGWVS DLIN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.82267 | 0.0 | ear| meristem| ovary| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G801627 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G801627_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067110 | 0.0 | BT067110.1 Zea mays full-length cDNA clone ZM_BFb0196G17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144558.2 | 0.0 | uncharacterized protein LOC100277562 | ||||
Swissprot | Q6L4N4 | 1e-175 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A3L6EJ15 | 0.0 | A0A3L6EJ15_MAIZE; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | C0PFP1 | 0.0 | C0PFP1_MAIZE; Zinc finger CCCH domain-containing protein 23 | ||||
TrEMBL | K0D9M5 | 0.0 | K0D9M5_MAIZE; C3H39 C3H type transcription factor (Fragment) | ||||
STRING | GRMZM5G801627_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 | Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 2e-69 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G801627_P01 |
Publications ? help Back to Top | |||
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