PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G425920_P01 | ||||||||
Common Name | LOC100383828, ZEAMMB73_102801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 215aa MW: 23598.3 Da PI: 11.0537 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.3 | 2.6e-11 | 110 | 169 | 2 | 61 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ke r +r+ +N ++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ GRMZM2G425920_P01 110 KEQNRLKRLLRNHVSAQQARERKKAYLTELEAKAKGLELRNAELEQRVSTLQNENNTLRQ 169 78899*************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-10 | 109 | 173 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-9 | 110 | 169 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.162 | 111 | 171 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.6E-15 | 114 | 171 | No hit | No description |
SuperFamily | SSF57959 | 6.0E-11 | 114 | 170 | No hit | No description |
CDD | cd14704 | 4.09E-16 | 114 | 164 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 116 | 131 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSSAREEEKK IDAEMRRRRS SRRRRAPRAR SPPAASAPPA PLATTSRKEG RRATRRYGGV 60 PEMGGASASA SSGAGADERP KGEDGKQGQV AAGAQPPAGG KKRGRTAGDK EQNRLKRLLR 120 NHVSAQQARE RKKAYLTELE AKAKGLELRN AELEQRVSTL QNENNTLRQV IDVSGKEFKF 180 TWASGRGELC DIYEERQSGE DGNGLLLECG STWRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24190 | 0.0 | cell culture| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G425920 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G425920_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068393 | 0.0 | BT068393.1 Zea mays full-length cDNA clone ZM_BFb0155D12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400780.1 | 1e-152 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q9SM50 | 1e-32 | HY5_SOLLC; Transcription factor HY5 | ||||
TrEMBL | A0A1D6J7Y3 | 1e-115 | A0A1D6J7Y3_MAIZE; Transcription factor HY5-like | ||||
TrEMBL | C0PJC4 | 1e-115 | C0PJC4_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JFH4 | 1e-115 | K4JFH4_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G425920_P01 | 1e-152 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 | Representative plant | OGRP2081 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 1e-25 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G425920_P01 |
Publications ? help Back to Top | |||
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