PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G366584_P01
Common NameCPP6
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 662aa    MW: 71464 Da    PI: 6.6262
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G366584_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14363402241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        ++++CnC++skClk+YC Cfaa+++Cs+ C+C++C+N++ 
  GRMZM2G366584_P01 363 SCRHCNCRRSKCLKLYCPCFAAKVYCSSLCSCQGCSNNHA 402
                        689**********************************986 PP
2TCR43.94.6e-14448487140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+gCnC+ks+ClkkYCeCf++g+ C  +C+C +CkN+ 
  GRMZM2G366584_P01 448 RHKRGCNCRKSSCLKKYCECFQSGVGCCISCRCMSCKNSF 487
                        589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-15362403IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.074363488IPR005172CRC domain
PfamPF036388.2E-11365400IPR005172CRC domain
SMARTSM011149.6E-13448489IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.9E-10450486IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MMGISSCIEL SGSAALAPET CTPFEDATNS PSKWLQSTLF GSETLGDANK QDIDGKPNHT  60
ADVEHVKPSS TCSDQNGFDQ MDSSTSGRNV QENELAKQDS NDLAPCSLNH LITHCGTGNS  120
VISISDLALE AQQQSWKVKG DSIISSTSLA VDQENLEDSR REDFVEQFGS YIQSAADGTH  180
VYYADAAAGV TINHDQEMLP AIIRNQLDSN DYILDTSKVS IDGTALSQHQ YGTHRCSLFN  240
DKSGTSNKSM QNISDINPAS ICGNNYLNPV DPALCALPGI GLHLNTVALN LSDMPLTINH  300
PLLSEQTSPA TVIPGSETVL YGSEVFTHVD NYSSQKTMPN ADKSGQQIHK KKRRKLQKDD  360
GESCRHCNCR RSKCLKLYCP CFAAKVYCSS LCSCQGCSNN HAHEELVSCT RKRTESHNPL  420
AFAPTVTHTY GTVLEFGDDS NKTPASARHK RGCNCRKSSC LKKYCECFQS GVGCCISCRC  480
MSCKNSFGKR EGVLLLTTEK LEKGGKAKGT HGEEDKLAFG KHHVVSQSGD IPAYENPLVT  540
PLLETYRSPF LLPSTCSKLP PPTAGCSYGL HNPRPPMKSD VLFSPLEDVL HNPAEMVLGN  600
GFSDTQEVGS SCTTSVKVVS PNKKRVASLQ IGTALSPIGS SSRKLVLKSF PSLTGDADSE  660
PH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1136748514120Protein lin-54 homolog
5fd3_B6e-1136748514120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KKKRR
2349354KKKRRK
3350354KKRRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G366584
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G366584_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6084580.0EF608458.1 Zea mays major facilitator superfamily protein (MFSP) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665101.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A1D6KXC70.0A0A1D6KXC7_MAIZE; Protein tesmin/TSO1-like CXC 2
STRINGGRMZM2G366584_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.16e-74Tesmin/TSO1-like CXC domain-containing protein