PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G353734_P01 | ||||||||
Common Name | ZEAMMB73_977464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 526aa MW: 55497.2 Da PI: 8.9135 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.4 | 3.5e-33 | 195 | 250 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 +++Y+eClkNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr v GRMZM2G353734_P01 195 TWVYRECLKNHAASLGGHALDGCGEFMPSPEADrADPSSLRCAACGCHRNFHRRLV 250 689***************************9999*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-27 | 196 | 249 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.6E-30 | 198 | 248 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 198 | 248 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.893 | 198 | 249 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 374 | 440 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.08E-15 | 376 | 439 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-20 | 381 | 437 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSPKFPPYLT SSLAEPRPDN TVHFREKTET NKRRQEGDQS GGAAGACCSD RMAGDQDASS 60 GDAVLSLQFR AAGGEPALRY KRQRVQAEDG RRGHSSGVCG GEDGIPGDGN DKGEEDGTGA 120 LAVAVTHHCR HRRQKIKGKK KLWMTVVTPS LSEKKGARER MEATVDLKYE PLFPNGGVSS 180 ATKKTRLRVA AGGETWVYRE CLKNHAASLG GHALDGCGEF MPSPEADRAD PSSLRCAACG 240 CHRNFHRRLV ELPLPPPLLA LPPPLAPAPA VASHVMRDSR RTMRGEEARL PAAFDDEAEE 300 SDASSDFYED RPLSPMPAQA AIVSPGYRQA TTHTLLALII GAPSPQTPAA APRPPPPTSV 360 GPMPAPATAP GAAAAAAAAA RKRSRTKFSP EQKQRMQALS SRLGWRLQKC DEAAVDQCCQ 420 EIGVSKGVFK VWMHNNKHNF VGGHSARRSA SASASAAAAN PAMQQRSDAA AVYPSSHGDG 480 APAAAVVAHP SAPPPVPVHS NFNIEGTAAD DFRVQPSTAS GGSPQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 4e-18 | 381 | 439 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G353734 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G353734_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU946376 | 0.0 | EU946376.1 Zea mays clone 306064 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678609.1 | 0.0 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q6ER21 | 3e-62 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1D6Q1P9 | 0.0 | A0A1D6Q1P9_MAIZE; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A3L6F877 | 0.0 | A0A3L6F877_MAIZE; Zinc-finger homeodomain protein 10 | ||||
STRING | GRMZM2G353734_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 6e-27 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G353734_P01 |