PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G305582_P02
Common Namecl5418_1, ZEAMMB73_056446
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 363aa    MW: 38370.5 Da    PI: 7.4979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G305582_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-1094119127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC+ f++ GtC+y  +C+FaHg+
  GRMZM2G305582_P02  94 FKTKLCCKFRA-GTCPYVTNCNFAHGM 119
                        69*********.*************95 PP
2zf-CCCH17.76.4e-06177200326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + C+ f+    C+yGd+C+F H+
  GRMZM2G305582_P02 177 GRHCKKFYTEEGCPYGDTCTFLHD 200
                        5669*****9*************7 PP
3zf-CCCH43.45.6e-14238263126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +  tG+C++G++C+FaHg
  GRMZM2G305582_P02 238 WKTRICNKWEMTGYCPFGSKCHFAHG 263
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-891124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-1491126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02893120IPR000571Zinc finger, CCCH-type
SMARTSM003560.001493119IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-794119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-8174202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.54174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178174202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-15233263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-9234264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629237265IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-11238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAASAAGADA SIWATEDDYR QWSAEPGYGD RNPSSRAGSE  60
QPPPGKKARG GGGGSDSGGG GSTSKSRAIG KMFFKTKLCC KFRAGTCPYV TNCNFAHGME  120
ELRKPPPNWQ EIVAAHEEAT EQREEHQIPI MTSGSVVAGD GGGGSGGGSQ GGRAFKGRHC  180
KKFYTEEGCP YGDTCTFLHD EQSKARESVA ISLSPTVGGG GYNAASANGV MVQKPSNWKT  240
RICNKWEMTG YCPFGSKCHF AHGSTAIIAE LHKYGGGLVD IDGRDILSTP DSKQAGGSAK  300
APLESAAAST ALPPHADVYH LGIQSQRSAI ASQRSGQLQR PIQKWKGPDK ISRIYGDWID  360
ENE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.175660.0ear| endosperm| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G305582
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G305582_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354040.0BT035404.1 Zea mays full-length cDNA clone ZM_BFb0059F20 mRNA, complete cds.
GenBankBT0678900.0BT067890.1 Zea mays full-length cDNA clone ZM_BFc0191K02 mRNA, complete cds.
GenBankEU9640070.0EU964007.1 Zea mays clone 275074 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661404.10.0uncharacterized protein LOC100193200 isoform X1
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3L6GEM30.0A0A3L6GEM3_MAIZE; Zinc finger CCCH domain-containing protein 56
TrEMBLB4FE660.0B4FE66_MAIZE; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLK0DCN00.0K0DCN0_MAIZE; C3H31 transcription factor (Fragment)
STRINGGRMZM2G305582_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-95C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]