PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149683_P01
Common NameZEAMMB73_371358
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 349aa    MW: 37362 Da    PI: 8.1504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149683_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.6e-26173230359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  GRMZM2G149683_P01 173 DPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCTARKLVERSPAKPGVLIVTYMAEHCHP 230
                        89***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.89E-24169232IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-26169232IPR003657WRKY domain
SMARTSM007742.1E-30171231IPR003657WRKY domain
PROSITE profilePS5081128.908173232IPR003657WRKY domain
PfamPF031063.9E-22173230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRDVLLRMAE HFNDWDLQAV VRSCGGVAHA GPPPEPADAA TAPAAPRGDE APERVPGGAR  60
ATPAVSARRQ ERAPPPVALL CDLEYLDSDH KPFLLPVARP SPRPRVGGGG HGSEVMISFP  120
AGAASTSGVQ QRASSPRRKP GARTPRPKRS KKSQLKKVVR EMPVADGSSS SPDPWAWRKY  180
GQKPIKGSPY PRGYYKCSSM KGCTARKLVE RSPAKPGVLI VTYMAEHCHP VPAQLNALAG  240
TTRHKPSSGA ATELHSAASS PSSHEQGQTV EKAAGLRERG IGNNETSNST MAGEFGGEEI  300
AAVDDEDEFW PAEMDLDELL APVDGDFDFE HVIEEDGVLG RRRPQKICP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-16152232279Disease resistance protein RRS1
5w3x_D2e-16152232279Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149683
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149683_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114166e-97AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706016e-97AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656686.30.0WRKY transcription factor 22
TrEMBLA0A3L6DTX30.0A0A3L6DTX3_MAIZE; WRKY transcription factor 22
TrEMBLK7UZT10.0K7UZT1_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G149683_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1140847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-36WRKY family protein