PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G109987_P02 | ||||||||
Common Name | HB133, rld1, ZEAMMB73_130618, Zm.94098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92379.5 Da PI: 6.2999 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 30 | 88 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ GRMZM2G109987_P02 30 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 88 5678****************************************************996 PP | |||||||
2 | START | 158.4 | 5.4e-50 | 168 | 376 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 +aee+ +e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v ++++ e+l d++ W +++++ e+ + g g++ GRMZM2G109987_P02 168 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKGIEILKDRP-SWFRDCRSLEVFTRFPAGngGTI 258 688999****************************************************8888888888.***************99999*** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +l++++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ ++++vRae+lpSg+l++p+++g+s v++v+h dl+++++++ GRMZM2G109987_P02 259 ELIYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPNaasTQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 350 *****************************************999999999999*************************************** PP HHHHHHHHHHHHHHHHHHHHTXXXXX CS START 180 llrslvksglaegaktwvatlqrqce 205 +lr+l++s+++ ++k+++ +l+++++ GRMZM2G109987_P02 351 VLRPLYESSRVVAQKMTTVALRHLRQ 376 *****************999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.289 | 25 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-15 | 27 | 93 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 29 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.27E-15 | 30 | 90 | No hit | No description |
Pfam | PF00046 | 6.3E-16 | 31 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 32 | 88 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.78E-6 | 82 | 121 | No hit | No description |
PROSITE profile | PS50848 | 26.025 | 158 | 386 | IPR002913 | START domain |
CDD | cd08875 | 1.55E-73 | 162 | 378 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 6.3E-21 | 166 | 351 | IPR023393 | START-like domain |
SMART | SM00234 | 1.1E-37 | 167 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-35 | 168 | 379 | No hit | No description |
Pfam | PF01852 | 8.5E-48 | 168 | 376 | IPR002913 | START domain |
Pfam | PF08670 | 9.3E-50 | 699 | 841 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MGTMVAAVAL RGGSSDSGGF DKVPGMDSGK YVRYTPEQVE VLERLYIDCP KPSSSRRQQL 60 LRECPILSNI EPKQIKVWFQ NRRCRDKQRK ESSRLQAVNR KLTAMNKLLM EENERLQKQV 120 SQLVHENAHM RQQLQNTSLA NDTSCESNVT TPPNPIRDAS NPSGLLAIAE ETFTEFLSKA 180 TGTAIDWVQM PGMKPGPDSV GIVAISHGCR GVAARACGLV NLEPTKGIEI LKDRPSWFRD 240 CRSLEVFTRF PAGNGGTIEL IYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG 300 SGGGPNAAST QQFVRAEMLP SGYLVRPCEG GGSIVHIVDH LDLEAWSVPE VLRPLYESSR 360 VVAQKMTTVA LRHLRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS 420 VMGGDGIEDV VIACNSTKKI RNTSNAGITF GAPGGIICAK ASMLLQSVPP AVLVRFLREH 480 RSEWADYNID AYLASSLKTS ACSLPGLRPM RFSEGQMIMP LAHTVENEEI LEVVRLEGQP 540 LTHDEALLSR DIHLLQLCTG IDEKSVGSSF QLVFAPIDEH FPDDAPLISS GFRVIPLDVK 600 TDGVSSGRTL DLASSLDVGS AAPQASGESP DDCSLRSVLT IAFQFPYEMH LQDSVAAMAR 660 QYVRSVISAV QRVSMAISPS QSGLNAGHRM LSGFPEAATL ARWVCQSYHY HLGMELLNQS 720 DGAGEALLKM LWHHPDAVLC CSFKEKPMFT FANKAGLDML ETSLVALQDL TLDKIFDESG 780 RKALFSDISK LMEQGYAYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNIH CLAFCFVNWS 840 FV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94098 | 0.0 | cell culture| ear| embryo| endosperm| meristem| pericarp| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G109987 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G109987_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066287 | 0.0 | BT066287.1 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296150.1 | 0.0 | rolled leaf 1 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | C0PDB8 | 0.0 | C0PDB8_MAIZE; HB transcription factor | ||||
STRING | GRMZM2G109987_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G109987_P02 |
Entrez Gene | 542515 |
Publications ? help Back to Top | |||
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