PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G100794_P01 | ||||||||
Common Name | gpm817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48041.2 Da PI: 8.6838 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.5 | 1.5e-10 | 58 | 80 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++++rtG C++G +CkF+H+ GRMZM2G100794_P01 58 PDCSYYMRTGMCRFGMTCKFNHP 80 78********************8 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 102 | 126 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ GRMZM2G100794_P01 102 QPECQYYLKTGTCKFGATCKFHHPR 126 799********************96 PP | |||||||
3 | zf-CCCH | 36 | 1.2e-11 | 149 | 172 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ GRMZM2G100794_P01 149 KECAYYLRTGQCKFGSTCKFHHPQ 172 68********************97 PP | |||||||
4 | zf-CCCH | 39.1 | 1.3e-12 | 309 | 334 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ GRMZM2G100794_P01 309 DQPECQFYMKTGDCKFGSVCKFHHPR 334 689*********************96 PP | |||||||
5 | zf-CCCH | 36.3 | 9.6e-12 | 354 | 380 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+ r+G Ck+G++CkF+H++ GRMZM2G100794_P01 354 PGEPICSFYNRYGMCKFGPNCKFHHPM 380 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.7E-4 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.99 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 58 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 59 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 60 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-10 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 105 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-7 | 144 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 149 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 151 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-5 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-6 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 313 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-7 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 355 | 380 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 358 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0004006 | anatomy | mesophyll cell | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MAAPSGGGGG GAGEGSSSAA AAMTIGAHGV DQVTEAMWQM NLGDAMELGP YPERVGDPDC 60 SYYMRTGMCR FGMTCKFNHP ADRKLAVAAA RMKGEYPQRI GQPECQYYLK TGTCKFGATC 120 KFHHPREKAA MATRVQLNEL GYPLRLNEKE CAYYLRTGQC KFGSTCKFHH PQPSTMMVAV 180 RGSVYSPGQS ATSPGHHAYQ GAVTSWPLSR SASFIASPRW PGHSSYAQVI VPPGLVQVPG 240 WSPYAAQIGS SSSDDQQRTP GAAQYYTGSR QSGTPGIGDR GMFSSYQAGS VPVGLYAVQT 300 ENVFPERPDQ PECQFYMKTG DCKFGSVCKF HHPRERIIPT PNCALSPLGL PLRPGEPICS 360 FYNRYGMCKF GPNCKFHHPM GNPMYGHASS PTSEAQTSRR MLAHVPSHPE VSPDSGSGRS 420 RRIVHSDSQQ IPSVERITER EAS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94407 | 0.0 | endosperm| glume| meristem| ovary| pedicel| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G100794 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G100794_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034178 | 0.0 | BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds. | |||
GenBank | BT060843 | 0.0 | BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds. | |||
GenBank | BT064219 | 0.0 | BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds. | |||
GenBank | BT085745 | 0.0 | BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds. | |||
GenBank | EU956984 | 0.0 | EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130819.1 | 0.0 | uncharacterized protein LOC100191923 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | B4FAP0 | 0.0 | B4FAP0_MAIZE; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | K0DG34 | 0.0 | K0DG34_MAIZE; C3H19 transcription factor (Fragment) | ||||
STRING | GRMZM2G100794_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-151 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G100794_P01 |
Entrez Gene | 100191923 |
Publications ? help Back to Top | |||
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