PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G080516_P01
Common NameLOC100274398, ZEAMMB73_272572
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 270aa    MW: 29005.4 Da    PI: 5.7318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G080516_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.9e-20129179255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp  ng  +r++lg+++tae+Aa a+++a+ +++g
  GRMZM2G080516_P01 129 HYRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 179
                        8********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-32128187IPR001471AP2/ERF domain
CDDcd000181.60E-29128187No hitNo description
SuperFamilySSF541711.44E-23129189IPR016177DNA-binding domain
PfamPF008472.7E-14129179IPR001471AP2/ERF domain
SMARTSM003803.9E-37129193IPR001471AP2/ERF domain
PROSITE profilePS5103224.276129187IPR001471AP2/ERF domain
PRINTSPR003678.7E-11130141IPR001471AP2/ERF domain
PRINTSPR003678.7E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLLNPASEAS VLDTIRQHLL EEPADESFGS LVADQWSGSL PFRTDDADDM VVFGALQDAF  60
AYGWLPDGSF VHVKPEPVRS PDSSSYPCSY DGSPCFGLLD PEPPLTPGTT TPSSRGQEEA  120
AAAMARGKHY RGVRQRPWGK FAAEIRDPAR NGARVWLGTY DTAEDAALAY DRAAYRMRGS  180
RALLNFPLRI GSGDKRPSPA PPEPATSSDS SSSSASGSHK RRKRGEAAAA NMAMALVPPP  240
SQLNRPAQPW FPAAPVEQAA MAPRVEQIVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-40125194170ATERF1
3gcc_A4e-40125194170ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.974210.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G080516
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G080516_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429350.0BT042935.1 Zea mays full-length cDNA clone ZM_BFc0067I16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142230.10.0uncharacterized protein LOC100274398
SwissprotQ404791e-54ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLB4G0P70.0B4G0P7_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G080516_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-35ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]