PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G072820_P01 | ||||||||
Common Name | LOC103645865, Zm.7865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 104aa MW: 11120.3 Da PI: 8.5371 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20 | 1.2e-06 | 29 | 71 | 14 | 54 |
HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54 d+i + +++L+ llP++ ++++ + s a +L+ ++ YI+sL GRMZM2G072820_P01 29 DQISELLSKLQALLPESQarNGGAHRGSAARVLQDTCSYIRSL 71 6899************6667888888***************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.375 | 15 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-8 | 29 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-9 | 29 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 104 aa Download sequence Send to blast |
MSSGRRSSRT RRAGSSSLSS STSRSISEDQ ISELLSKLQA LLPESQARNG GAHRGSAARV 60 LQDTCSYIRS LHQEVDNLSE TLAELLASAD VTSDQAAVIR SLLM |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 16927145 | 1e-110 | ||||
Expression Atlas | GRMZM2G072820 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths, lamina joint, stems and panicles. Expressed at low levels in roots. {ECO:0000269|PubMed:20009022}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G072820_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ951311 | 3e-59 | JQ951311.1 Zea mays isolate tac907.62 chromosome 2 insertion sequence Ac, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668794.1 | 1e-65 | transcription factor ILI1 | ||||
Swissprot | A2XY47 | 7e-44 | ILI1_ORYSI; Transcription factor ILI1 | ||||
Swissprot | Q7X742 | 7e-44 | ILI1_ORYSJ; Transcription factor ILI1 | ||||
TrEMBL | A0A1D6DWS9 | 3e-64 | A0A1D6DWS9_MAIZE; Transcription factor PRE3 | ||||
STRING | GRMZM2G072820_P01 | 4e-65 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12293 | 28 | 37 | Representative plant | OGRP8216 | 4 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26945.1 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G072820_P01 |
Entrez Gene | 103645865 |