PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G039828_P01 | ||||||||
Common Name | LOC100192956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 196aa MW: 20615.5 Da PI: 10.6977 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.3 | 5.9e-12 | 102 | 162 | 2 | 62 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ GRMZM2G039828_P01 102 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKGLELRNAELEQRVSTLQNENNTLRQI 162 78899***************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-12 | 101 | 165 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-10 | 102 | 163 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.967 | 103 | 166 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.1E-16 | 106 | 165 | No hit | No description |
SuperFamily | SSF57959 | 1.31E-11 | 106 | 163 | No hit | No description |
CDD | cd14704 | 8.29E-15 | 106 | 156 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 108 | 123 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAAQEQEQEQ EKQQAKTSTT SSLPSSSERS SSSARNNLTE GGAESDEEIR RVPEMGGASA 60 SASSGAGADE RPKGEDGKQG QVAAGAQPPA GGKKRGRTAG DKEQNRLKRL LRNRVSAQQA 120 RERKKAYLTE LEAKAKGLEL RNAELEQRVS TLQNENNTLR QILKNTTAHA SKRSGGGGGG 180 GGKGGDGGKK HHLAKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85964 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G039828 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G039828_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035088 | 0.0 | BT035088.1 Zea mays full-length cDNA clone ZM_BFb0038J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131606.1 | 1e-134 | uncharacterized protein LOC100192956 | ||||
Swissprot | Q9SM50 | 3e-45 | HY5_SOLLC; Transcription factor HY5 | ||||
TrEMBL | B4FDA0 | 1e-133 | B4FDA0_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G039828_P01 | 1e-134 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 | Representative plant | OGRP2081 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 2e-33 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G039828_P01 |
Entrez Gene | 100192956 |
Publications ? help Back to Top | |||
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