PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00007015.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 25974.2 Da PI: 7.4853 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 17 | 41 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F s L++H +H FANhyb_rscf00007015.1.g00001.1 17 HVCQepGCGKVFQFASKLRKHEDSH 41 689999***************9888 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 108 | 132 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +F+ ksnL +H + H FANhyb_rscf00007015.1.g00001.1 108 KCEyeGCLHTFTKKSNLLQHVKAvH 132 79999***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-8 | 12 | 41 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.22E-5 | 13 | 42 | No hit | No description |
SMART | SM00355 | 0.035 | 17 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 17 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 41 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 49 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 51 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 14 | 77 | 98 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.96E-8 | 88 | 149 | No hit | No description |
PROSITE profile | PS50157 | 11.967 | 107 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 107 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 108 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 109 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-6 | 135 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 3.7 | 138 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.933 | 138 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 140 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
FHSEDCPSTG VEGQKQHVCQ EPGCGKVFQF ASKLRKHEDS HVKLDSVEAF CSEPDCMKYF 60 SNKQCLQEHI QSCHTHVACE ICEKKVWKKN IRSHLRTHEE GASSLEIKCE YEGCLHTFTK 120 KSNLLQHVKA VHLQQKPYAC SFSGCGKTFS YKHVRDKHEN SGCHVYAYGD FEEADEQFRS 180 RPRGGRKRIC PTVEMLVRKR VTPPDQFGPE TEFLSQLFSQ EEDER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287098.1 | 1e-160 | PREDICTED: transcription factor IIIA-like isoform X1 | ||||
Refseq | XP_004287099.1 | 1e-161 | PREDICTED: zinc finger protein 11-like isoform X3 | ||||
Swissprot | Q84MZ4 | 2e-87 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2P6RJH4 | 1e-149 | A0A2P6RJH4_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004287098.1 | 1e-160 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 1e-90 | transcription factor IIIA |