PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00004737.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 323aa MW: 36131.4 Da PI: 6.8402 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k F + L H r+H FANhyb_rscf00004737.1.g00001.1 260 FKCPFCSKIFGSGQALGGHKRSH 282 89**************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.014 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-6 | 4 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 221 | 241 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.13E-5 | 222 | 282 | No hit | No description |
Pfam | PF13912 | 8.0E-10 | 260 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.034 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEKHQCKLCS RFFNNGRALG GHMKAHMAVL PLPPKTHQQL APAESTHSAS SFSSSSEDEQ 60 QKGSHQQEEE DQKGLAYGLR ENPKKSFRLA DPEFSFQVDA GSVVIQDRES ETESRNPTRR 120 RSKRNRRMSF TENLEMKKPK LTTSTVDSPP AEPEPLSSVS DTSPEEDVAM CLMMLSRDVW 180 MGANYGEADQ EQNGKEVVVA VKDEEFEQLE EIKLKKTRGK NRCDKCSKLF RSHQAMCVHR 240 KICFQSEEEA NNAASSASLF KCPFCSKIFG SGQALGGHKR SHLSGTSGYS KVVTKVKEVR 300 ESFIDLNMPA PQEEDDFSVV SDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 126 | RNPTRRRSKRNRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299433.1 | 0.0 | PREDICTED: zinc finger protein ZAT4 | ||||
TrEMBL | A0A2P6P8G1 | 0.0 | A0A2P6P8G1_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004299433.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 2e-39 | C2H2-like zinc finger protein |