PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003187.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 101aa    MW: 11315 Da    PI: 4.668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003187.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-1220763996
                                    EETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                              B3 39 edesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                                     +   +sWe+++  + +++   v +  Wk Fv++n Lk+gD ++F+l+g ++++ ++kv
  FANhyb_rscf00003187.1.g00001.1 20 LSFGENSWEMTY--NETKRLkLVDRHSWKAFVDDNSLKAGDGCIFELMGGDRTKVLFKV 76
                                    556679******..55554448889**********************987766666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.701182IPR003340B3 DNA binding domain
CDDcd100172.23E-11980No hitNo description
SuperFamilySSF1019363.14E-101878IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-92075IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-102280IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
EIPTTLDPNL PAGTSVPMVL SFGENSWEMT YNETKRLKLV DRHSWKAFVD DNSLKAGDGC  60
IFELMGGDRT KVLFKVQILR GDIPAELIEK YSGETEKPIT I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024176760.11e-55B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2P6SE032e-54A0A2P6SE03_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004307181.17e-43(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-06B3 family protein