PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00002483.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 544aa MW: 59122.9 Da PI: 6.9847 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.6e-09 | 367 | 414 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq FANhyb_rscf00002483.1.g00001.1 367 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 414 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-17 | 361 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.96E-10 | 361 | 418 | No hit | No description |
PROSITE profile | PS50888 | 15.663 | 363 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-17 | 363 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 367 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 369 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MEDNFFLNTG IPPSLHFEPA QSMPSWRSLS TAMDIQSADQ NCSSARSLEC FYNPNLEKHS 60 TDHQNVHFES ALSSMVSSPV ASNSNISNES FVIRELIGKL GSIGNSSNEI SATIPANSSY 120 MGGGNGSTNT SCYSTPLNSP PKLNLPMMDH LAKEKLPSLG KTSMPLNSSV AEFSADPGFA 180 ESAAKFSCFG SRSFNGRTSQ QLGTHTNNSE VGYRSNQLMG NGNKLPRVSS SPSLKALGPQ 240 TEQRNSQLPN SREESKSTVV SEHQMGETGM VPSSSTDLSS RKRKAASKGK AKDPIKVAEA 300 SDVSDLNAKR CKANENGNNE NGPVKAEEDT KGSTSSDEKQ AKTGAKPPEP LKDYIHVRAR 360 RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL 420 SMKLSSVNTR LDFNMDALMS KEIFQQQSSS LPHPIFPSDS SAQAIYGHQQ NPAHCSVDPL 480 DSALCRSLGM QLPPLNAFSE AMPQYPAFGE DDLQTIVQMG FGQNPNKETE FHGSNQASRM 540 KIEL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292343.1 | 0.0 | PREDICTED: transcription factor bHLH62 | ||||
TrEMBL | A0A2P6PU22 | 0.0 | A0A2P6PU22_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004292343.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-104 | bHLH family protein |