PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002481.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 207aa MW: 23804.3 Da PI: 10.0947

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002481.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.1	1.4e-12	10	58	43	92
S-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 43 grsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 sW+vk+ k++++ ++++GW +Fv+ + L++g+f+vF+++g++ f+ FANhyb_rscf00002481.1.g00002.1 10 QGSWDVKV--GKSGNGqLYFKEGWLKFVNHHSLRVGEFLVFEHKGNMVFNV 58 579***..666666699*********************999888854 PP
2	B3	63.6	3.1e-20	106	191	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 f +++ps+ ks + +p +f+e++g+ +++ +tl d+s r W+v+l++ kk++r+++++GW eF +an+L++g FANhyb_rscf00002481.1.g00002.1 106 FRATMKPSHRDKS-YMNIPPSFVEANGIAHKS--SMTLIDPSRRPWKVELKHwkVKKGQRVTIARGWTEFYRANKLNDG 181 3445555555555.6*********988766..59999*******9855566777*************** PP -EEEEEE-SS CS B3 78 DfvvFkldgr 87 +++F+l+++ FANhyb_rscf00002481.1.g00002.1 182 YVCIFELHQK 191 ****8764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.56	1	69	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.575	1	64	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.7E-13	10	64	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-13	10	70	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.94E-10	12	58	No hit	No description
Pfam	PF02362	3.7E-9	12	58	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.2E-24	102	205	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-22	102	192	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.95E-19	104	192	No hit	No description
PROSITE profile	PS50863	13.465	105	207	IPR003340	B3 DNA binding domain
SMART	SM01019	5.4E-17	105	197	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-17	106	191	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDAAMIQSCQ GSWDVKVGKS GNGQLYFKEG WLKFVNHHSL RVGEFLVFEH KGNMVFNVVS 60 YGLSACEKEY HFPSDSMVNG RMTTPHETQR VKRPRDDNLE GGTHFFRATM KPSHRDKSYM 120 NIPPSFVEAN GIAHKSSMTL IDPSRRPWKV ELKHWKVKKG QRVTIARGWT EFYRANKLND 180 GYVCIFELHQ KTAVSKNVVV NVKICCH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306894.1	1e-133	PREDICTED: B3 domain-containing protein REM9-like
Refseq	XP_004306898.1	1e-133	PREDICTED: B3 domain-containing protein Os03g0212300-like
STRING	XP_004306893.1	1e-133	(Fragaria vesca)
STRING	XP_004306898.1	1e-133	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14574	9	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	5e-21	B3 family protein