PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00001973.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 359aa MW: 40604 Da PI: 4.8036 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.6 | 1.2e-28 | 135 | 195 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ g+++prsYYrCt++ +C+++k+v+r++edp+++eitY+g+H+++ FANhyb_rscf00001973.1.g00002.1 135 EDGHSWRKYGQKDILGAKYPRSYYRCTFRntqSCWATKQVQRADEDPTIFEITYKGKHTCS 195 7**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.8E-28 | 131 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 134 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-38 | 134 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 135 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.448 | 135 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MDTASKSWEQ KSLVGEIIEG MELAQQLRLS LNATSASSEN REFLVQRILT SYEKALLLLQ 60 LSGSPQTSHV DAKSAVLHES RMSANTSPCG DDYNHMSFKD HQELQEISKK RRSMAKWTDH 120 VIRVSSENGI EGSQEDGHSW RKYGQKDILG AKYPRSYYRC TFRNTQSCWA TKQVQRADED 180 PTIFEITYKG KHTCSHGSNS VPPPPSPEQQ EQKRHKRENV SEPQQSQVTQ MSFPTNLRVD 240 TENLEDKEMM ESPFSFTSTS FGCMLSGDDF LSSMFDNENF FGNFSQPLLS PAAGESNYYL 300 APPSQMRNIA VNEQLSESDL TEIISATNSR TNSPIPDMDF PLDLVELDPN FPFDTPGFF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-19 | 135 | 194 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298890.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A1S5SLA6 | 0.0 | A0A1S5SLA6_FRAVE; WRKY transcription factor 27 | ||||
STRING | XP_004298890.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23810.1 | 6e-55 | WRKY family protein |