PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001794.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19706.5 Da PI: 8.4532 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 4.9e-13 | 22 | 71 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklyey 49 k+ien r vtf+kR+ i K +EL +LC+aev v++fs+ k y y FANhyb_rscf00001794.1.g00003.1 22 KKIENAEDRLVTFTKRKSVIYNKCNELAaTLCGAEVGVVVFSEFEKPYSY 71 68*************************559************98887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.418 | 14 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-18 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-20 | 15 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-10 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-15 | 23 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-10 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
FVFVFLTMAI KKTRGKQKIE IKKIENAEDR LVTFTKRKSV IYNKCNELAA TLCGAEVGVV 60 VFSEFEKPYS YGHPSIESIA DRFLNQQSPQ ETNGDNIASH VVGAYKQARI TEILNKYNEL 120 QEKLSNEQLR EKELQQREKA RASEGLGWWQ RPIKELDLEG TKENVCFLPA PP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305560.1 | 1e-118 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P6RCY5 | 1e-72 | A0A2P6RCY5_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004305560.1 | 1e-117 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 9e-30 | AGAMOUS-like 57 |