PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001586.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CPP | ||||||||
Protein Properties | Length: 570aa MW: 62944.2 Da PI: 7.7317 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.3 | 4e-15 | 299 | 336 | 1 | 38 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkkskClkkYCeC++a++ Cs C+C++C+N FANhyb_rscf00001586.1.g00003.1 299 RHKRGCNCKKSKCLKKYCECYQANVGCSAACRCDGCQN 336 589**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 26.736 | 214 | 339 | IPR005172 | CRC domain |
SMART | SM01114 | 0.018 | 222 | 252 | IPR033467 | Tesmin/TSO1-like CXC domain |
SMART | SM01114 | 2.5E-14 | 299 | 340 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 301 | 336 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
EVSQHHRGIR RHLQFETAVA HKNSSFDSHK SLCSLRHDTA NLRSASKRIN LKTLASQINN 60 KAFNSPQGVS CDTSQLSCLY ESVRSGQIGG NSSTFPSICS GIGLHLNSIT QSTSMSSDVF 120 SSRKSTGCLS TPDQMLEHDN LEHESSSSFI SAVPQQNYSC MGDDQQGSQT AVHTTFSFYS 180 TNGLPYLPCD STDQMLVDQD SVPFEEMNAS EGANKIEESN QLSEKRKRQC FAAGVFCLDS 240 CSCENCYNKP EFEDTVFDAR QQIESRNPLA FAPRVVKHDF NSSPKIMEEA DWTTPSSARH 300 KRGCNCKKSK CLKKYCECYQ ANVGCSAACR CDGCQNPCGT MADQEYNRAE KWETHIADKL 360 DTIKGGNDCI KATNMDLYSP SWEGLSVISN FTPLSNPCSS TMVSSASSIM RNCTKNSQAR 420 LQSSRLQPSG TGELKMGRSP VIFTPQIFES KGPYQLSSDG ASYERTDDDI PELLKEPSIP 480 PKVVKGSPNQ KRVSPPQSRA EKLTSRSPKG LRSGRKFILQ AMPSFPPLSP YSDSKAVNDT 540 MNDHEAQPKR HTPSFVRPSK FFTIPLQETP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-11 | 251 | 336 | 48 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-11 | 251 | 336 | 48 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466742.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2P6RWF0 | 0.0 | A0A2P6RWF0_ROSCH; Putative transcription factor Tesmin family | ||||
STRING | XP_004305318.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-49 | Tesmin/TSO1-like CXC domain-containing protein |