PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00001547.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 618aa MW: 69885.7 Da PI: 5.2529 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 515.6 | 2.2e-157 | 48 | 428 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipe 79 +el++rmw+d+m+lkrlke++ + k++ + ++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipe FANhyb_rscf00001547.1.g00001.1 48 DELERRMWRDKMRLKRLKEQTTKGG--KDV-IVTAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPE 123 79********************955..888.677789****************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS- CS EIN3 80 kgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdpp 158 kgkpv+gasd+Lr+WWk+kv+fdrngpaaiskyqa+n++++++++++ ++h+l+elqDTtlgSLLsalmqhcdpp FANhyb_rscf00001547.1.g00001.1 124 KGKPVTGASDNLREWWKDKVRFDRNGPAAISKYQADNAVPGRNDGCNP-IGPTPHTLQELQDTTLGSLLSALMQHCDPP 201 **********************************************88.9***************************** PP TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT CS EIN3 159 qrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdk 237 qrrfplekgv+pPWWP+G+e+ww+elgl+kdqg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdk FANhyb_rscf00001547.1.g00001.1 202 QRRFPLEKGVPPPWWPSGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDK 280 ******************************************************************************* PP --SHHHHHHHHHHTTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX........... CS EIN3 238 msakesfallsvlnqeekecatvsahss...slrkqspkvtlsceqkedvegkkeskikhvqavktta........... 302 m+akes ++l+++nqee ++++++++s s+ s ++++++ +++dveg +++ +vq++k + FANhyb_rscf00001547.1.g00001.1 281 MTAKESSTWLAIINQEECLARELYPNSCpplSSAGASGSLVVNDCSEYDVEGAEDEPNFDVQECKPDNlhslnfgmetm 359 **************************4444666779***************777777699******99*********** PP ....................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 ....................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 ++++ rkrk ++s+ ++v +++ ++tc+ q+++se ++f+d++s+++++ FANhyb_rscf00001547.1.g00001.1 360 rerlqvhqptsfpvkgdaitNLEFMRKRK-PSSDLNMVVDQK-IYTCEFVQCPYSEFCHGFHDRTSRDNHQ 428 ****************************9.677777777776.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 5.6E-131 | 48 | 297 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 8.6E-76 | 171 | 307 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 4.32E-62 | 176 | 300 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 618 aa Download sequence Send to blast |
MMMMFDEMGF CGDLDFISAT PGGEVAIPQA ETEATMEDDY TDDEIDVDEL ERRMWRDKMR 60 LKRLKEQTTK GGKDVIVTAK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI 120 IPEKGKPVTG ASDNLREWWK DKVRFDRNGP AAISKYQADN AVPGRNDGCN PIGPTPHTLQ 180 ELQDTTLGSL LSALMQHCDP PQRRFPLEKG VPPPWWPSGN EEWWPELGLP KDQGPPPYKK 240 PHDLKKAWKV GVLTAVIKHM SPDIAKIRKL VRQSKCLQDK MTAKESSTWL AIINQEECLA 300 RELYPNSCPP LSSAGASGSL VVNDCSEYDV EGAEDEPNFD VQECKPDNLH SLNFGMETMR 360 ERLQVHQPTS FPVKGDAITN LEFMRKRKPS SDLNMVVDQK IYTCEFVQCP YSEFCHGFHD 420 RTSRDNHQLS CPFSNRSSEF GAPNLLVNEI KPIIFPHSFV QNKAATSSTK PVPPSFDLSG 480 GVPDDGQKMI SDLMSFYDSN VQGDNNANPN SLATNVKNFS QPNVAHQQDE YFRGQGVRLD 540 GNFFEESNIS SNHHVFTREE GQFDQFKVTS SPFETNHNSN FPMMFGSSFD LASFDYKEDL 600 QGLALPMEKP VETSIWFQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 5e-85 | 175 | 307 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 5e-85 | 175 | 307 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288382.1 | 0.0 | PREDICTED: protein ETHYLENE INSENSITIVE 3 | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2P6QF15 | 0.0 | A0A2P6QF15_ROSCH; Putative transcription factor EIL family | ||||
TrEMBL | A0A482EV49 | 0.0 | A0A482EV49_9ROSA; Ethylene-insensitive 3-like 3 protein | ||||
TrEMBL | M9XFM8 | 0.0 | M9XFM8_ROSHC; EIN3-3 | ||||
STRING | XP_004288382.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |