PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001476.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 401aa    MW: 45613.8 Da    PI: 5.8935
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001476.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-2198193185
                        trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                                     +Wt++ v++Li ++  ++++  +g           +kk++W+ vsk m  +g+++sp+qC++k+++lnkryk+++++ +
  FANhyb_rscf00001476.1.g00001.1  98 KWTDRVVRLLISVVACVGDDGVDGGeglkrksavlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILG 176
                                     7**************66666666533445566788******************************************** PP

                        trihelix  70 kr.tsessstcpyfdql 85 
                                     ++ +++++++ ++ d++
  FANhyb_rscf00001476.1.g00001.1 177 RGtSCRVVENPSLMDSM 193
                                     **669999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-1896220No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDGSGLGGGF LSGPSGGTLD LESSIPRHQE KQMGHPVLAH HQRVNVMSGV GVDHHPVRLV  60
EVKGSIPRED EPSYNEDGND ESLEGVKGKK GSTWQRMKWT DRVVRLLISV VACVGDDGVD  120
GGEGLKRKSA VLQKKGKWKT VSKIMIGKGC HVSPQQCEDK FNDLNKRYKR LNDILGRGTS  180
CRVVENPSLM DSMPHLSAKA KDDVRKILSS KQLFYKEMCA YHNGQWIPGC HDLDLQGDPL  240
PPGRCSTDNN VSEEEGVEEH HDTEDDDSDN EDNNADGSDR DRMGRTGDRK RSSEEDDHFW  300
QHVSLDTFEV EMAEQRVNCE AEDLELEKQR YRWLRYRSKK DRELERLRLE NERMKLENEK  360
RVLQLRQKEL EIDVRRSEAS LEPSVGIDRL LGRDLDLGRH Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291801.10.0PREDICTED: uncharacterized protein LOC101300312
TrEMBLA0A2P6QFE90.0A0A2P6QFE9_ROSCH; Uncharacterized protein
STRINGXP_004291801.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-65sequence-specific DNA binding transcription factors