PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001076.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 536aa MW: 60298.5 Da PI: 4.5177 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 6.1e-31 | 7 | 84 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++++w+fFs+rd+ky++ g r+nrat++gyWkatgkd+++++ ++ vglkktLvfykgrap+ge+tdWvmhey+l FANhyb_rscf00001076.1.g00002.1 7 LKTGDRQWFFFSPRDRKYPNgGGRSNRATRHGYWKATGKDRNITC-YNRSVGLKKTLVFYKGRAPTGERTDWVMHEYTL 84 467899*************9678**********************.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.755 | 1 | 107 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-34 | 7 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-15 | 13 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MECLSLLKTG DRQWFFFSPR DRKYPNGGGR SNRATRHGYW KATGKDRNIT CYNRSVGLKK 60 TLVFYKGRAP TGERTDWVMH EYTLDEEELK RCQNVQEYYA LYKVFKKSGP GPKNGEQYGA 120 PFREEDWADD ECPIINSSAD REISVEQIGE VVANYNAKPF GEVPLKQVEQ ITANGYANNN 180 SEAHSTIDDL EEFMKQIADD AVLDLPQIDD LVHSLSQVVS EEETQSTVVD LYSSEVKCPQ 240 SHTTFDPSGQ QGNEYASFDF TQSATSQTQL YEASEASASD VHKLESFTPI LREEDFLEMD 300 DLLGPEPTIS NTGNSGGNLQ FNELDGFDLF QDAAMFFNEM GPMDQGNVSH QFMNSMGSNV 360 VNQFDYQIQP APLQINHQLN QESTQINNQL WVQNERRDFY ASTETTKGSG PPFTSGVVHE 420 SSNHRPQENP NQNGNEAAGV TSQFSSALWS FVESIPTTPA SASENALVSR AFERMSSFSR 480 MRIIARSTNV PAGKDSETMR ESWKRGFFFL PVLVALCAIF WVLMASLRQW GRCISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-27 | 10 | 113 | 72 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290458.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A2P6PRH1 | 0.0 | A0A2P6PRH1_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004290458.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-112 | NAC domain containing protein 17 |