PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000650.1.g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TALE | ||||||||
Protein Properties | Length: 565aa MW: 63250.3 Da PI: 5.6185 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.4e-08 | 483 | 521 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + FANhyb_rscf00000650.1.g00007.1 483 MFQNflHPYPKDSEKHLLAVKSGLTRSQVSNWFINARVR 521 6887779******************************88 PP | |||||||
2 | BELL | 72.3 | 8.1e-24 | 356 | 423 | 1 | 69 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 +rqe++ kka Ll ll+++d+ Y+q+v++++tv+s+F+a+++ ++ +++++Alk+iS +++L+++i+ FANhyb_rscf00000650.1.g00007.1 356 QRQEIETKKANLLALLQMLDDCYNQCVDEIHTVVSAFHAATDTDP-SIHARFALKTISMFYKNLRERIS 423 699******************************************.9********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.5E-22 | 299 | 424 | IPR006563 | POX domain |
Pfam | PF07526 | 2.0E-23 | 305 | 423 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.11 | 462 | 525 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.96E-11 | 465 | 526 | No hit | No description |
SMART | SM00389 | 1.3E-5 | 465 | 529 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-15 | 466 | 534 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-26 | 468 | 531 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-14 | 482 | 521 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MMDDQLFNVP TDVTARNAVM VDGIGPHTTM NSFAQSYSLD LNDQNHFISV LPMLPAIDGD 60 SVIGCHSNHL HDTNSDAIDE SYRRNNLREP LFGSSSFYDH SVFQGVPDSA AFSALFPASD 120 NLQEDLNNLA ISATPMHSSE IYVSNAGSGI PSFVLAPPVN YGYDEILGSI NTQQWELNKY 180 AAAPSEPGEK TPARTTGLQT YSPSIGNLDP NGWSSPNGAN YEMTYHSYSS PKSSNELALT 240 LATSTSSIVN GMHIRDQCSD IDCSGIVQPC LNQTRFGSDQ QASCSSEEPS PSFGSCKPPQ 300 LSQIICGSRY FHVIQEILTQ IASYSLENLD QSSYSSVGVD AGLDSRFEVH DEPAQQRQEI 360 ETKKANLLAL LQMLDDCYNQ CVDEIHTVVS AFHAATDTDP SIHARFALKT ISMFYKNLRE 420 RISTYCLSVS EQFSPESPTE SETSFDEIQK HLALQHMKKK EHQIWRPQRG LPEKSVSVLR 480 AWMFQNFLHP YPKDSEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM YADMNRRKAR 540 QNENTERNRR SLHHVSINNQ KFHVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 471 | 529 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 471 | 529 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 539 | 549 | RQNENTERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292788.2 | 0.0 | PREDICTED: uncharacterized protein LOC101305635 | ||||
Swissprot | P48731 | 1e-102 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A2P6Q162 | 0.0 | A0A2P6Q162_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004292788.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-102 | homeobox gene 1 |
Publications ? help Back to Top | |||
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