PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000650.1.g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 565aa    MW: 63250.3 Da    PI: 5.6185
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000650.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-084835211854
                                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  FANhyb_rscf00000650.1.g00007.1 483 MFQNflHPYPKDSEKHLLAVKSGLTRSQVSNWFINARVR 521
                                     6887779******************************88 PP

2BELL72.38.1e-24356423169
                            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 
                                     +rqe++ kka Ll ll+++d+ Y+q+v++++tv+s+F+a+++ ++  +++++Alk+iS  +++L+++i+
  FANhyb_rscf00000650.1.g00007.1 356 QRQEIETKKANLLALLQMLDDCYNQCVDEIHTVVSAFHAATDTDP-SIHARFALKTISMFYKNLRERIS 423
                                     699******************************************.9********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.5E-22299424IPR006563POX domain
PfamPF075262.0E-23305423IPR006563POX domain
PROSITE profilePS5007111.11462525IPR001356Homeobox domain
CDDcd000862.96E-11465526No hitNo description
SMARTSM003891.3E-5465529IPR001356Homeobox domain
SuperFamilySSF466892.69E-15466534IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-26468531IPR009057Homeodomain-like
PfamPF059201.8E-14482521IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MMDDQLFNVP TDVTARNAVM VDGIGPHTTM NSFAQSYSLD LNDQNHFISV LPMLPAIDGD  60
SVIGCHSNHL HDTNSDAIDE SYRRNNLREP LFGSSSFYDH SVFQGVPDSA AFSALFPASD  120
NLQEDLNNLA ISATPMHSSE IYVSNAGSGI PSFVLAPPVN YGYDEILGSI NTQQWELNKY  180
AAAPSEPGEK TPARTTGLQT YSPSIGNLDP NGWSSPNGAN YEMTYHSYSS PKSSNELALT  240
LATSTSSIVN GMHIRDQCSD IDCSGIVQPC LNQTRFGSDQ QASCSSEEPS PSFGSCKPPQ  300
LSQIICGSRY FHVIQEILTQ IASYSLENLD QSSYSSVGVD AGLDSRFEVH DEPAQQRQEI  360
ETKKANLLAL LQMLDDCYNQ CVDEIHTVVS AFHAATDTDP SIHARFALKT ISMFYKNLRE  420
RISTYCLSVS EQFSPESPTE SETSFDEIQK HLALQHMKKK EHQIWRPQRG LPEKSVSVLR  480
AWMFQNFLHP YPKDSEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM YADMNRRKAR  540
QNENTERNRR SLHHVSINNQ KFHVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14471529563Homeobox protein Meis2
3k2a_B1e-14471529563Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1539549RQNENTERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292788.20.0PREDICTED: uncharacterized protein LOC101305635
SwissprotP487311e-102ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2P6Q1620.0A0A2P6Q162_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004292788.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-102homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]