PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000615.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 476aa    MW: 52736.5 Da    PI: 7.9373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000615.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12362407655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR ri +++ +L++l P+     +k  + ae+Le+AveYIk+Lq
  FANhyb_rscf00000615.1.g00003.1 362 SIAERMRRTRISERMRKLQDLFPNM----DKQTNTAEMLELAVEYIKDLQ 407
                                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-15359421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.95E-12360411No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14361419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSSLLYSPQF KSSEAELRKS HTEFLDSSNG FQQQQSQQQQ SSGLMRYRSA PSSVLLDLVD  60
NNGGAGCEDF RDFRYPRPSS PEVETVLARF ISSCNAPDGD NGSNHSAHNL FQERPVKQEA  120
GDSVSKQNGY SNSPQMMYQT QQVHPLDNAS SFGAFKSTGL ENSMQSKIGA ANRSNLVRQS  180
SSPAGFFPNL NVDNGFNLMK DTSSFGVSNG TNGEASPSTS RLSTQFSFSS ASPPYSTESR  240
RLPRIAEIGN GNIGEGSEPD QSLGNAANGG SSHYIPDYIN NTWDNVAFHD LKRGRDNDGN  300
KFSTTAMDTQ IVDFGHRSHG LTHHLSLPKH FEMPGMEKLL HFQDSVPCKI RAKRGFATHP  360
RSIAERMRRT RISERMRKLQ DLFPNMDKQT NTAEMLELAV EYIKDLQKEV KTLKDTKAKC  420
SCSSSAVSHQ LVNLNTVKVV ITSKMNEMGE ENLLASSSSI PYMELRKQHV CQFGHF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308213.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_011468810.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_011468811.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A2P6S7D00.0A0A2P6S7D0_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308213.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-45bHLH family protein