PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000602.1.g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22737.9 Da PI: 8.658 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.2 | 2.5e-28 | 4 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a +++r+ +++sl+yeA+ r+ +P FANhyb_rscf00000602.1.g00007.1 4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTF 82 6****************************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelall 97 G+vg+++++++ +q+++e++l+ FANhyb_rscf00000602.1.g00007.1 83 GSVGLLSSGNWAQCQAAVEAVLA 105 ******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.02 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-22 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH 60 QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV EAVLAGLPIV ENNEPVPYLN 120 PVPPVNSCDI RHVSKDTSLG KTRNRFKRSR SKVQLGSITE AAAEWGRVNP LEFGQCSSGG 180 GGERSMQSVE TVEAPWEMNQ GQTGPGWKW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299077.1 | 1e-146 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 2e-67 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
Swissprot | Q9M886 | 3e-67 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2P6R1Q0 | 1e-120 | A0A2P6R1Q0_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004299077.1 | 1e-145 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-66 | LOB domain-containing protein 42 |