PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000504.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 690aa MW: 79519.2 Da PI: 6.3499

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000504.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.4	6.6e-25	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkw 76 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +++w FANhyb_rscf00000504.1.g00003.1 69 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgNSQW 146 69******************8888.**************************************99777899 PP FAR1 77 evtkleleHnHela 90 +v+++++ HnHel FANhyb_rscf00000504.1.g00003.1 147 YVSQFSNVHNHELL 160 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-23	69	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-22	292	385	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	564	599	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-7	567	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-4	574	601	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MKPSNNIWIR RQQCPCGDWK CYIKYEGDDP ASVSSLHVKS EITSSSSSSE AVFTPYVGQI 60 FKTDDDAFEY YSNFARKNGF SIRKARSTES QNLGIYRRDF VCYRSGFNQP RKKANVEHPR 120 ERKSVRCGCD AKLYLTKEIV DGNSQWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQEADQE 180 RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDIRNF IRTCKKSVQD NDALLNEKRE 240 NDILELLEAC KSMTERDPGF VYDYTIDENE KVENIAWSYG DSVRAYTVFG DVVAFDTTYR 300 SITYGLLLGV WFGMDNHGKA IFLGCVLLHD ESSHSFAWAL QAFMRFMRGR CPQTILTDID 360 SGLRDAISRE LTSTRHVICI WHILSKISSW FSLPLGPQYE NFKAEFEMLS HLESVEDFEH 420 QWNILVARFG LVPDKHIDLL YSSRESWSLS YIRGYFLART LTAEFSVALE SFLKRILNAQ 480 TCLQVLFEQV SIAANFGSQT REGMQYMNVK TGMPIEEHAR NILTPYAFSV LQHEIVLSVQ 540 YATTEMANGS YLVRHYKKLD GECLVIWIPD DEQIHCSCKE FEHSGILCRH SLRVLMVKNY 600 FQLPEKYYLL RWRLESSLGY LADENAQSSA GDCAQSFNTL TASLLTESLV SKDRFNYVHR 660 ELSSLLEHVR NMPVIDEYAM NMAVNSISDS

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MKPSNNIWIR RQQCPCGDWK CYIKYEGDDP ASVSSLHVKS EITSSSSSSE AVFTPYVGQI  60
FKTDDDAFEY YSNFARKNGF SIRKARSTES QNLGIYRRDF VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD AKLYLTKEIV DGNSQWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQEADQE  180
RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDIRNF IRTCKKSVQD NDALLNEKRE  240
NDILELLEAC KSMTERDPGF VYDYTIDENE KVENIAWSYG DSVRAYTVFG DVVAFDTTYR  300
SITYGLLLGV WFGMDNHGKA IFLGCVLLHD ESSHSFAWAL QAFMRFMRGR CPQTILTDID  360
SGLRDAISRE LTSTRHVICI WHILSKISSW FSLPLGPQYE NFKAEFEMLS HLESVEDFEH  420
QWNILVARFG LVPDKHIDLL YSSRESWSLS YIRGYFLART LTAEFSVALE SFLKRILNAQ  480
TCLQVLFEQV SIAANFGSQT REGMQYMNVK TGMPIEEHAR NILTPYAFSV LQHEIVLSVQ  540
YATTEMANGS YLVRHYKKLD GECLVIWIPD DEQIHCSCKE FEHSGILCRH SLRVLMVKNY  600
FQLPEKYYLL RWRLESSLGY LADENAQSSA GDCAQSFNTL TASLLTESLV SKDRFNYVHR  660
ELSSLLEHVR NMPVIDEYAM NMAVNSISDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467299.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2P6S1E2	0.0	A0A2P6S1E2_ROSCH; Putative transcription factor FAR family
STRING	XP_004303564.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]