PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000485.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 313aa    MW: 35374.2 Da    PI: 9.191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000485.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07133155123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     + C+ Cgk F+r  nL+ H+r H
  FANhyb_rscf00000485.1.g00001.1 133 HYCQVCGKGFKRDANLRMHMRAH 155
                                     68*******************99 PP
2zf-C2H210.80.0015234257123
                                     EEETTTT.EEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                     y+C+ C+ k Fs  s+L++H + +
  FANhyb_rscf00000485.1.g00001.1 234 YVCKRCNrKQFSVLSDLRTHEKHC 257
                                     9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-6131158No hitNo description
PROSITE profilePS5015712.653133160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-7133159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SMARTSM0035569196229IPR015880Zinc finger, C2H2-like
SMARTSM0035522234256IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGAMASMSNV IQEIIVTASS MMFTCQQMAL VAPGNDTRSE PNFTISTAGR SNTRDAGFYP  60
THDQTLDWFS TESYNDCLPR DVISRSHRQV ETKELPPRVQ RNNALQVENP PPENSSYDII  120
ELDAADLLAK YTHYCQVCGK GFKRDANLRM HMRAHGDEYK TSIALSNPLK NNNMNSAMNV  180
NGSSNAESSM KLPRKYSCPQ EGCRWNQKHA KFQPLKSMIC VKNHYRRSHC PKMYVCKRCN  240
RKQFSVLSDL RTHEKHCGDL RWQCSCGTTF SRKDKLMGHV ALFVGHTPVM INSNFPIRHG  300
RAESQAAAGG LMQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294539.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2P6QGQ30.0A0A2P6QGQ3_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294539.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-100C2H2 family protein